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AT3G28715.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.731
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26091700 (2015): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15574830 (2004): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : ATPase, V0/A0 complex, subunit C/D
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATPase, V0/A0 complex, subunit C/D; FUNCTIONS IN: hydrogen ion transmembrane transporter activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, V0/A0 complex, subunit C/D (InterPro:IPR002843), ATPase, V0 complex, subunit D (InterPro:IPR016727); BEST Arabidopsis thaliana protein match is: ATPase, V0/A0 complex, subunit C/D (TAIR:AT3G28710.1); Has 636 Blast hits to 635 proteins in 308 species: Archae - 22; Bacteria - 2; Metazoa - 293; Fungi - 152; Plants - 74; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Protein Annotations
BioGrid:7832eggNOG:COG1527eggNOG:KOG2957EMBL:AF428348EMBL:AP000420EMBL:AP002057EMBL:AY062635
EMBL:BT000154EMBL:CP002686EnsemblPlants:AT3G28715EnsemblPlants:AT3G28715.1entrez:822503ExpressionAtlas:Q9LHA4GeneID:822503
Genevisible:Q9LHA4GO:GO:0005773GO:GO:0005774GO:GO:0005794GO:GO:0009506GO:GO:0015078GO:GO:0015991
GO:GO:0033179hmmpanther:PTHR11028HOGENOM:HOG000199065InParanoid:Q9LHA4IntAct:Q9LHA4InterPro:IPR002843InterPro:IPR016727
OMA:DCLSENDPANTHER:PTHR11028PaxDb:Q9LHA4Pfam:PF01992Pfam:Q9LHA4PhylomeDB:Q9LHA4PIRSF:PIRSF018497
PRIDE:Q9LHA4PRO:PR:Q9LHA4ProteinModelPortal:Q9LHA4Proteomes:UP000006548Reactome:R-ATH-77387Reactome:R-ATH-917977RefSeq:NP_189513.1
SMR:Q9LHA4STRING:3702.AT3G28715.1SUPFAM:0044678SUPFAM:SSF103486TAIR:AT3G28715UniGene:At.23331UniProt:Q9LHA4
Coordinates (TAIR10) chr3:+:10778025..10780350
Molecular Weight (calculated) 40790.00 Da
IEP (calculated) 4.75
GRAVY (calculated) -0.20
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MYGFEALTFN IHGGYLEAIV RGHRAGLLTT ADYNNLCQCE NLDDIKMHLS ATKYGPYLQN EPSPLHTTTI VEKCTLKLVD DYKHMLCQAT EPMSTFLEYI
101: RYGHMIDNVV LIVTGTLHER DVQELIEKCH PLGMFDSIAT LAVAQNMREL YRLVLVDTPL APYFSECLTS EDLDDMNIEI MRNTLYKAYL EDFYNFCQKL
201: GGATAEIMSD LLAFEADRRA VNITINSIGT ELTREDRKKL YSNFGLLYPY GHEELAICED IDQVRGVMEK YPPYQAIFSK MSYGESQMLD KAFYEEEVRR
301: LCLAFEQQFH YAVFFAYMRL REQEIRNLMW ISECVAQNQK SRIHDSVVYM F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)