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AT3G28670.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.702
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : oxidoreductase, zinc-binding dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); Has 151 Blast hits to 150 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSI8eggNOG:KOG4703EMBL:AF424558EMBL:AY093134
EMBL:BT010553EMBL:CP002686EnsemblPlants:AT3G28670EnsemblPlants:AT3G28670.1
entrez:822497GeneID:822497GO:GO:0005886GO:GO:0016021
Gramene:AT3G28670.1hmmpanther:PTHR33966hmmpanther:PTHR33966:SF1HOGENOM:HOG000030756
IntAct:Q944S5InterPro:IPR029454KEGG:ath:AT3G28670OMA:FHELRVP
Pfam:PF14778PhylomeDB:Q944S5Proteomes:UP000006548RefSeq:NP_566839.1
TAIR:AT3G28670TMHMM:TMhelixUniGene:At.21730UniGene:At.67312
UniProt:Q944S5
Coordinates (TAIR10) chr3:+:10744183..10746983
Molecular Weight (calculated) 54005.50 Da
IEP (calculated) 4.76
GRAVY (calculated) -0.06
Length 491 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKAVVGEDT RLTSVEDRLS HSAIPAEVGL VIGKLSSVLD RGFVFDLIPT PSNDDGEPAC AVLETKDDKR KPSKSKSQSS ESSSLSIDSD WVAEHARQVS
101: RMLLGGMKVV GIYVWASDIA FKNSTMILCQ AMKAVSDAIR HLDPSLNEAL LIHICYSPRR WNCRTCLLSS SITSSNLRPC DFKLGKVLSS LQRFRCSYNF
201: SFRLPIYGEG GSSAQTFTDT IRKELAIHAK ELNSANAMID GDLVHNDEPC NTDGEHEIEL LFPFMKDTRA EASTAKNVTG ILLFTGSVFS YAYLNVKEPV
301: SQAIADIKAD IIRSLQSRLD IICDESEQDL NPTDVGDNEN ADGMSKIPIS KLILNSSIKA CHLRLPRRVL VPWLSGMFIC DYLQPFESLE VVKERCIELM
401: SMEHSSIDES KISEVETETS LLIAESMWDV ISPATSASSF CLGGNVERTT DGEDETKRTS NASTASNVPI LVGIFVLLLS IVLGFMLYQS D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)