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AT3G28600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.463
plasma membrane 0.338
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28610.1); Has 21037 Blast hits to 19726 proteins in 2862 species: Archae - 1274; Bacteria - 7399; Metazoa - 2914; Fungi - 2841; Plants - 2424; Viruses - 34; Other Eukaryotes - 4151 (source: NCBI BLink).
Protein Annotations
DNASU:822490EC:3.6.1.3eggNOG:COG0465eggNOG:KOG0743EMBL:AP000420EMBL:CP002686EnsemblPlants:AT3G28600
EnsemblPlants:AT3G28600.1entrez:822490Gene3D:3.40.50.300GeneID:822490Genevisible:F4J0C0GO:GO:0005524GO:GO:0009651
GO:GO:0016887Gramene:AT3G28600.1hmmpanther:PTHR23070hmmpanther:PTHR23070:SF5HOGENOM:HOG000237995InParanoid:F4J0C0InterPro:IPR003593
InterPro:IPR003959InterPro:IPR003960InterPro:IPR025753InterPro:IPR027417iPTMnet:F4J0C0KEGG:ath:AT3G28600OMA:FFSPYVE
PaxDb:F4J0C0Pfam:PF00004Pfam:PF14363PRIDE:F4J0C0PROSITE:PS00674ProteinModelPortal:F4J0C0Proteomes:UP000006548
RefSeq:NP_189501.2scanprosite:PS00674SMART:SM00382SMR:F4J0C0STRING:3702.AT3G28600.1SUPFAM:SSF52540TAIR:AT3G28600
UniGene:At.42766UniProt:F4J0C0
Coordinates (TAIR10) chr3:+:10722437..10723870
Molecular Weight (calculated) 54874.70 Da
IEP (calculated) 9.37
GRAVY (calculated) -0.47
Length 477 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMGNTFGSS LASLFFLWAT IQQIFPNHLR IAIKEFLIST IQQLSFVQRF SDRFINFFSP YVEISFSQYE DYQFNHAFAA IETYLGAKAT DKAKHLRASQ
101: VKESKGLVLK RDETKVRDEY EGGTVWWEME TDSTGYRTFK LTFHRRSRDI VTDSYIKYVF EEGKSIQAKS KQMKLFTNNP SSHWGTSKKS FWRYIDFEHP
201: ASFHTLAMDT KKKEEILNDL AAFSNGKEYY KKIGKAWKRG YLLHGPPGTG KSTMIAAMAN HLNYSIYDLE LTAIRNNSEL RKLLTATSSK SIIVIEDIDC
301: SLDLTGKRKK EKNLMTSRED GEQGTEEDKS FVTLSGLLNF IDGIWSACGQ ERIIIFTTNH FEKLDPALIR RGRMDMHIEL SYCSFEAFKI LAKNYLDLDT
401: HPLFKKIESL LKETKIAPAD VAENLMKKNT EIDADGSLKD LIQALEGKKK IHGAQVDEPK DKYTKKFYKA FCMSSKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)