AT3G28490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.770 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Oxoglutarate/iron-dependent oxygenase | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Oxoglutarate/iron-dependent oxygenase; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, L-ascorbic acid binding; INVOLVED IN: oxidation reduction, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; LOCATED IN: endomembrane system; EXPRESSED IN: petal, sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123), Metridin-like ShK toxin (InterPro:IPR003582); BEST Arabidopsis thaliana protein match is: Oxoglutarate/iron-dependent oxygenase (TAIR:AT3G28480.1); Has 2477 Blast hits to 2439 proteins in 330 species: Archae - 0; Bacteria - 383; Metazoa - 1060; Fungi - 71; Plants - 412; Viruses - 15; Other Eukaryotes - 536 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10679150..10680654 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32449.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.31 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 288 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSQYFLAFS LSLLLIFSQI SSFSFSVDPT RITQLSWTPR AFLYKGFLSD EECDHLIKLA KGKLEKSMVV ADVDSGESED SEVRTSSGMF LTKRQDDIVA 101: NVEAKLAAWT FLPEENGEAL QILHYENGQK YDPHFDYFYD KKALELGGHR IATVLMYLSN VTKGGETVFP NWKGKTPQLK DDSWSKCAKQ GYAVKPRKGD 201: ALLFFNLHLN GTTDPNSLHG SCPVIEGEKW SATRWIHVRS FGKKKLVCVD DHESCQEWAD AGECEKNPMY MVGSETSLGF CRKSCKAC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)