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AT3G28450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 14506206
AmiGO : plasma membrane 16618929
AmiGO : plasma membrane 17317660
AmiGO : plasma membrane 17644812
AmiGO : plastid 18431481
TAIR : plasma membrane 14506206
TAIR : plasma membrane 16618929
TAIR : plastid 18431481
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G27190.1); Has 101664 Blast hits to 59951 proteins in 2302 species: Archae - 40; Bacteria - 6408; Metazoa - 16028; Fungi - 2446; Plants - 69126; Viruses - 161; Other Eukaryotes - 7455 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G28450-MONOMEReggNOG:COG0515eggNOG:ENOG410IIWAEMBL:AB026644EMBL:AK117357EMBL:CP002686EMBL:FJ708730
EnsemblPlants:AT3G28450EnsemblPlants:AT3G28450.1entrez:822474Gene3D:2.60.120.200Gene3D:3.80.10.10GeneID:822474GO:GO:0000166
GO:GO:0005886GO:GO:0006468GO:GO:0006952GO:GO:0009507GO:GO:0016020GO:GO:0016021GO:GO:1900150
GO:GO:1900425Gramene:AT3G28450.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF166HOGENOM:HOG000116554IntAct:Q9LSI9InterPro:IPR000719
InterPro:IPR001245InterPro:IPR011009InterPro:IPR013210InterPro:IPR013320InterPro:IPR032675iPTMnet:Q9LSI9KEGG:ath:AT3G28450
OMA:KHMSNGTPDB:4L68PDBsum:4L68Pfam:PF07714Pfam:PF08263Pfscan:PS50011PhylomeDB:Q9LSI9
PROSITE:PS50011Proteomes:UP000006548RefSeq:NP_189486.1SMR:Q9LSI9STRING:3702.AT3G28450.1SUPFAM:SSF52058SUPFAM:SSF56112
TAIR:AT3G28450TMHMM:TMhelixUniGene:At.42673UniGene:At.42792UniProt:Q9LSI9
Coordinates (TAIR10) chr3:+:10667359..10669176
Molecular Weight (calculated) 66948.30 Da
IEP (calculated) 6.76
GRAVY (calculated) -0.10
Length 605 amino acids
Sequence (TAIR10)
(BLAST)
001: MKEIGSKPRK LLPLCFIIFL CFCSSVMAAD EDDIRCLRGL KASLTDPQNA LKSWNFDNTT LGFLCNFVGV SCWNNQENRV INLELRDMGL SGKIPDSLQY
101: CASLQKLDLS SNRLSGNIPT ELCNWLPFLV SLDLSNNELN GEIPPDLAKC SFVNSLVLSD NRLSGQIPVQ FSALGRLGRF SVANNDLSGR IPVFFSSPSY
201: SSDDFSGNKG LCGRPLSSSC GGLSKKNLGI IIAAGVFGAA ASMLLAFGIW WYYHLKWTRR RRSGLTEVGV SGLAQRLRSH KLTQVSLFQK PLVKVKLGDL
301: MAATNNFNSE NIIVSTRTGT TYKALLPDGS ALAVKHLSTC KLGEREFRYE MNQLWELRHS NLAPLLGFCV VEEEKFLVYK YMSNGTLHSL LDSNRGELDW
401: STRFRIGLGA ARGLAWLHHG CRPPILHQNI CSSVILIDED FDARIIDSGL ARLMVPSDNN ESSFMTGDLG EFGYVAPEYS TTMLASLKGD VYGLGVVLLE
501: LATGLKAVGG EGFKGSLVDW VKQLESSGRI AETFDENIRG KGHDEEISKF VEIALNCVSS RPKERWSMFQ AYQSLKAIAE KQGYSFSEQD DDFPLIFDTQ
601: ENEKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)