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AT3G28210.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
cytosol 0.841
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At3g28210-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc finger (AN1-like) family protein
Curator
Summary (TAIR10)
Encodes a putative zinc finger protein (PMZ).
Computational
Description (TAIR10)
PMZ; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to abscisic acid stimulus, response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type, AN1-like) family protein (TAIR:AT2G41835.1); Has 518 Blast hits to 511 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 257; Fungi - 120; Plants - 80; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111JCHeggNOG:KOG3183EMBL:AF139098EMBL:AK176522EMBL:AK176745EMBL:AP002056EMBL:BT024832
EMBL:CP002686EnsemblPlants:AT3G28210EnsemblPlants:AT3G28210.1entrez:822447Gene3D:4.10.1110.10GeneID:822447Genevisible:Q67YE6
GO:GO:0008270GO:GO:0009737GO:GO:0010200hmmpanther:PTHR14677hmmpanther:PTHR14677:SF2HOGENOM:HOG000243115InParanoid:Q67YE6
InterPro:IPR000058KEGG:ath:AT3G28210OMA:TVSICETPaxDb:Q67YE6Pfam:PF01428Pfam:Q67YE6Pfscan:PS51039
PhylomeDB:Q67YE6PIR:T50672PRO:PR:Q67YE6PROSITE:PS51039ProteinModelPortal:Q67YE6Proteomes:UP000006548RefSeq:NP_189461.1
SMART:SM00154SMR:Q67YE6STRING:3702.AT3G28210.1SUPFAM:SSF118310TAIR:AT3G28210tair10-symbols:PMZtair10-symbols:SAP12
UniGene:At.5800UniProt:Q67YE6
Coordinates (TAIR10) chr3:+:10520585..10521223
Molecular Weight (calculated) 20665.70 Da
IEP (calculated) 8.55
GRAVY (calculated) -0.58
Length 186 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGGGTEAFP DLGEHCQDPD CKLLDFLPFT CDGCKLVFCL EHRSYKSHNC PKSDHGSRTV SICETCSIAI ETTGFDEKGI KSLLEKHERS GDCDPNKKKK
101: PTCPVKRCKE ILTFANNLTC KYCGVKFCLK HRFPTDHVCN KKIINTAGTS SRWNERFMEA LSLRNQKGCG RGSSVSSKSS PSVRSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)