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AT3G28200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peroxidase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G40150.1); Has 4870 Blast hits to 4847 proteins in 335 species: Archae - 0; Bacteria - 4; Metazoa - 4; Fungi - 481; Plants - 4306; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G28200-MONOMERBioGrid:7775EC:1.11.1.7eggNOG:ENOG410IHS6eggNOG:ENOG4111FDSEMBL:AP002056EMBL:AY034973
EMBL:AY150382EMBL:CP002686EnsemblPlants:AT3G28200EnsemblPlants:AT3G28200.1entrez:822446GeneID:822446Genevisible:Q9LHA7
GO:GO:0004601GO:GO:0005576GO:GO:0005829GO:GO:0006979GO:GO:0009505GO:GO:0020037GO:GO:0042744
GO:GO:0046872Gramene:AT3G28200.1hmmpanther:PTHR31517hmmpanther:PTHR31517:SF11HOGENOM:HOG000237556InParanoid:Q9LHA7IntAct:Q9LHA7
InterPro:IPR000823InterPro:IPR002016InterPro:IPR010255InterPro:IPR019793InterPro:IPR019794KEGG:00940+1.11.1.7KEGG:ath:AT3G28200
KO:K00430ncoils:CoilOMA:YPKDPTIPaxDb:Q9LHA7PeroxiBase:197Pfam:PF00141Pfam:Q9LHA7
Pfscan:PS50873PhylomeDB:Q9LHA7PRIDE:Q9LHA7PRINTS:PR00458PRINTS:PR00461PRO:PR:Q9LHA7PROSITE:PS00435
PROSITE:PS00436PROSITE:PS50873ProteinModelPortal:Q9LHA7Proteomes:UP000006548RefSeq:NP_189460.1scanprosite:PS00435scanprosite:PS00436
SMR:Q9LHA7STRING:3702.AT3G28200.1SUPFAM:SSF48113TAIR:AT3G28200UniGene:At.13955UniGene:At.22736UniProt:Q9LHA7
Coordinates (TAIR10) chr3:+:10518082..10519032
Molecular Weight (calculated) 35304.40 Da
IEP (calculated) 9.35
GRAVY (calculated) -0.09
Length 316 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLKSLFLL FLFFFTAQSR LTTNFYSKTC PRFLDIIRDT ITNKQITNPT TAAAVIRLFF HDCFPNGCDA SVLISSTAFN TAERDSSINL SLPGDGFDVI
101: VRAKTALELA CPNTVSCSDI ISVATRDLLI TVGGPYYDVF LGRRDSRTSK SSLLTDLLPL PSTPISKIIQ QFESKGFTVQ EMVALSGAHS IGFSHCKEFV
201: GRVGRNNTGY NPRFAVALKK ACANYPKDPT ISVFNDIMTP NKFDNMYYQN LKKGLGLLES DHGLYSDPRT RYFVDLYAKN QDLFFKDFAK AMQKLSLFGI
301: QTGRRGEIRR RCDAIN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)