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AT3G28180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:21433285 (2011): plasma membrane
  • PMID:20374526 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cellulose-synthase-like C4
Curator
Summary (TAIR10)
encodes a gene similar to cellulose synthase
Computational
Description (TAIR10)
Cellulose-synthase-like C4 (CSLC04); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Cellulose-synthase-like C5 (TAIR:AT4G31590.1); Has 5595 Blast hits to 5589 proteins in 1569 species: Archae - 192; Bacteria - 4449; Metazoa - 13; Fungi - 97; Plants - 511; Viruses - 16; Other Eukaryotes - 317 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G28180-MONOMERBioCyc:MetaCyc:AT3G28180-MONOMERBioGrid:7773BRENDA:2.4.2.39CAZy:GT2EC:2.4.1.-eggNOG:COG1215
eggNOG:ENOG410IEP6EMBL:AP000415EMBL:AY056286EMBL:AY091433EMBL:CP002686EnsemblPlants:AT3G28180EnsemblPlants:AT3G28180.1
entrez:822444ExpressionAtlas:Q9LJP4Gene3D:3.90.550.10GeneID:822444Genevisible:Q9LJP4GO:GO:0000139GO:GO:0005768
GO:GO:0005794GO:GO:0005802GO:GO:0005886GO:GO:0016021GO:GO:0016757GO:GO:0071555Gramene:AT3G28180.1
hmmpanther:PTHR32044hmmpanther:PTHR32044:SF11HOGENOM:HOG000238309InParanoid:Q9LJP4InterPro:IPR029044iPTMnet:Q9LJP4KEGG:ath:AT3G28180
OMA:SAKNINEPaxDb:Q9LJP4Pfam:PF13641Pfam:Q9LJP4PhylomeDB:Q9LJP4PRIDE:Q9LJP4PRO:PR:Q9LJP4
ProteinModelPortal:Q9LJP4Proteomes:UP000006548RefSeq:NP_566835.1SMR:Q9LJP4STRING:3702.AT3G28180.1SUPFAM:SSF53448TAIR:AT3G28180
tair10-symbols:ATCSLC04tair10-symbols:ATCSLC4tair10-symbols:CSLC04tair10-symbols:CSLC4TMHMM:TMhelixUniGene:At.23682UniProt:Q9LJP4
UniProt:W8Q6R3
Coordinates (TAIR10) chr3:+:10506110..10509067
Molecular Weight (calculated) 77519.90 Da
IEP (calculated) 8.50
GRAVY (calculated) 0.06
Length 673 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPNSVAVTM EKPDNFSLLE INGSDPSSFP DKRKSISPKQ FSWFLLLKAH RLISCLSWLV SSVKKRIAFS AKNINEEEDP KSRGKQMYRF IKACLVISII
101: ALSIEIVAHF KKWNLDLINR PSWEVYGLVE WSYMAWLSFR SDYIAPLVIS LSRFCTVLFL IQSLDRLVLC LGCFWIKFKK IEPKLTEESI DLEDPSSFPM
201: VLIQIPMCNE REVYEQSIGA ASQLDWPKDR ILIQVLDDSD DPNLQLLIKE EVSVWAEKGV NIIYRHRLIR TGYKAGNLKS AMTCDYVKDY EFVTIFDADF
301: TPNPDFLKKT VPHFKGNPEL GLVQARWSFV NKDENLLTRL QNINLCFHFE VEQQVNGVFL NFFGFNGTAG VWRIKALEES GGWLERTTVE DMDIAVRAHL
401: NGWKFIYLND VEVTCELPES YEAYKKQQHR WHSGPMQLFR LCLPSIIKSK ISVWKKANLI FLFFLLRKLI LPFYSFTLFC IILPLTMFIP EAELPLWIIC
501: YVPIFISLLN ILPSPKSFPF LVPYLLFENT MSITKFNAMI SGLFQFGSAY EWVVTKKTGR SSESDLLAFA EKEEKLHRRN SESGLELLSK LKEQETNLVG
601: QETVKKSLGG LMRPKNKKKT NMVFKKELGL AFLLLTAAAR SFLSAHGLHF YFLLFQGLSF LVVGLDLIGE QIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)