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AT3G28080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.875
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nodulin MtN21 /EamA-like transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nodulin MtN21 /EamA-like transporter family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT3G28070.1); Has 2511 Blast hits to 2503 proteins in 449 species: Archae - 13; Bacteria - 1080; Metazoa - 6; Fungi - 0; Plants - 1195; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).
Protein Annotations
BioGrid:7762EMBL:AB028616EMBL:AY064026EMBL:AY084349EMBL:AY117190EMBL:CP002686EnsemblPlants:AT3G28080
EnsemblPlants:AT3G28080.1entrez:822432ExpressionAtlas:F4IYZ0GeneID:822432Genevisible:F4IYZ0GO:GO:0005886GO:GO:0006810
GO:GO:0016021GO:GO:0022857GO:GO:0055085hmmpanther:PTHR31218hmmpanther:PTHR31218:SF64HOGENOM:HOG000237441InParanoid:F4IYZ0
IntAct:F4IYZ0InterPro:IPR000620InterPro:IPR030184OMA:YILCISIPANTHER:PTHR31218PaxDb:F4IYZ0Pfam:F4IYZ0
Pfam:PF00892PhylomeDB:F4IYZ0PRIDE:F4IYZ0PRO:PR:F4IYZ0ProteinModelPortal:F4IYZ0Proteomes:UP000006548RefSeq:NP_566832.1
RefSeq:NP_850642.1STRING:3702.AT3G28080.1SUPFAM:0043518TAIR:AT3G28080TMHMM:TMhelixUniGene:At.27097UniProt:F4IYZ0
Coordinates (TAIR10) chr3:+:10451567..10455071
Molecular Weight (calculated) 39244.10 Da
IEP (calculated) 10.05
GRAVY (calculated) 0.77
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGAVSLWRR EAVFLTAMLA GETSIVGLST LFKVATSKGL NIYPFLSYSY LLASLLLLPS LFFTNRSRSL PPLSASILSK IGLLGFLGSM YVITGGIGIE
101: YSNPTLASAI GNIVPALTFI LAVIFRMEKV SFKERSSVAK VMGTILSLIG AFVVIFYHGP RVFVASSPPY LNFRQLSPPL SSSKSDWLIG GAILTIQGIF
201: VSVSFILQTH IMREYPEAFT VSILYILCIS IVTSMIGLVV EKNNPSIWII HFDITLFTIV TTGIITSVYY VIHSWAIRHK RPLYLAIFKP LSILIAVVMG
301: TIFLNDSLYL GCLIGGILIT LGFYVVMWGK ANEEKNKLLS FSGKEKTPLL LSGKNDQI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)