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AT3G27960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.594
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: pollen tube growth; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G27500.1); Has 11593 Blast hits to 4983 proteins in 549 species: Archae - 196; Bacteria - 3972; Metazoa - 4777; Fungi - 883; Plants - 387; Viruses - 3; Other Eukaryotes - 1375 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0457eggNOG:KOG1840EMBL:AP001302EMBL:AY462123EMBL:CP002686EnsemblPlants:AT3G27960EnsemblPlants:AT3G27960.1
entrez:822420Gene3D:1.25.40.10GeneID:822420GO:GO:0005886GO:GO:0009860GO:GO:0031347Gramene:AT3G27960.1
hmmpanther:PTHR19959hmmpanther:PTHR19959:SF160InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734KEGG:ath:AT3G27960ncoils:Coil
OMA:CEMESSDPfam:PF13374Pfam:PF13424Pfscan:PS50005Pfscan:PS50293PhylomeDB:Q9LII8PROSITE:PS50005
PROSITE:PS50293Proteomes:UP000006548RefSeq:NP_189435.1SMART:SM00028SMR:Q9LII8STRING:3702.AT3G27960.1SUPFAM:SSF48452
TAIR:AT3G27960UniGene:At.42873UniProt:Q9LII8
Coordinates (TAIR10) chr3:-:10380513..10382593
Molecular Weight (calculated) 72519.40 Da
IEP (calculated) 4.75
GRAVY (calculated) -0.32
Length 663 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVGESNERV KDDSALQASP RSPLSSIDLA IDGAMNASIE QLYHNVCEME SSDDQSPSRA SFISYGAESR IDLELRHLVG DVGEEGESKK EIILEKKEES
101: NGEGSLSQKK PLSNGKKVAK TSPNNPKMPG SRISSRKSPD LGKVSVDEES PELGVVLLKQ ARELVSSGEN LNKALDLALR AVKVFEKCGE GEKQLGLNLV
201: MSLHILAAIY AGLGRYNDAV PVLERSIEIP MIEDGEDHAL AKFAGCMQLG DMYGLMGQVE NSIMLYTAGL EIQRQVLGES DARVGETCRY LAEAHVQAMQ
301: FEEASRLCQM ALDIHKENGA AATASIEEAA DRKLMGLICD AKGDYEVALE HYVLASMAMS SQNHREDVAA VDCSIGDAYM SLARFDEAIF AYQKALAVFK
401: QGKGETHSSV ALVYVRLADL YNKIGKTRDS KSYCENALKI YLKPTPGTPM EEVATGFIEI SAIYQSMNEL DQALKLLRRA LKIYANAPGQ QNTIAGIEAQ
501: MGVVTYMMGN YSESYDIFKS AISKFRNSGE KKTALFGIAL NQMGLACVQR YAINEAADLF EEAKTILEKE CGPYHPDTLA VYSNLAGTYD AMGRLDDAIE
601: ILEYVVGTRE EKLGTANPEV EDEKQRLAAL LKEAGRGRSK RNRALLTLLD NNPEIANGQR PVY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)