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AT3G27925.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20049866 (2010): plastid
  • PMID:18433418 (2008): plastid plastid thylakoid plastid thylakoid lumen
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16648217 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:14617066 (2003): nucleus
  • PMID:11826309 (2002): plastid
  • PMID:11719511 (2002): plastid
FP Images

Arabidopsis cell culture (mitochondrial marker)

At3g27925-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker) v2

At3g27925-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DegP protease 1
Curator
Summary (TAIR10)
Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition.
Computational
Description (TAIR10)
DegP protease 1 (DEGP1); FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis, protein catabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: Trypsin family protein with PDZ domain (TAIR:AT5G39830.1); Has 16838 Blast hits to 16778 proteins in 2643 species: Archae - 108; Bacteria - 11023; Metazoa - 354; Fungi - 149; Plants - 421; Viruses - 7; Other Eukaryotes - 4776 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-896-MONOMERBioGrid:7746DIP:DIP-56439NEC:3.4.21.-eggNOG:COG0265eggNOG:KOG1320EMBL:AF028842
EMBL:AP000371EMBL:AP001302EMBL:AY039585EMBL:AY113073EMBL:CP002686EnsemblPlants:AT3G27925EnsemblPlants:AT3G27925.1
entrez:822416Gene3D:2.30.42.10GeneID:822416Genevisible:O22609GO:GO:0004252GO:GO:0005634GO:GO:0008236
GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009579GO:GO:0009735GO:GO:0010206GO:GO:0030163
GO:GO:0031977Gramene:AT3G27925.1hmmpanther:PTHR22939hmmpanther:PTHR22939:SF81HOGENOM:HOG000223641InParanoid:O22609IntAct:O22609
InterPro:IPR001478InterPro:IPR001940InterPro:IPR009003iPTMnet:O22609KEGG:ath:AT3G27925MEROPS:S01.472OMA:QLVRFGK
PaxDb:O22609PDB:3QO6PDBsum:3QO6Pfam:O22609Pfam:PF13180Pfam:PF13365Pfscan:PS50106
PhylomeDB:O22609PRIDE:O22609PRINTS:PR00834PRO:PR:O22609PROSITE:PS50106ProteinModelPortal:O22609Proteomes:UP000006548
RefSeq:NP_189431.2SMART:SM00228SMR:O22609STRING:3702.AT3G27925.1SUPFAM:SSF50156SUPFAM:SSF50494TAIR:AT3G27925
tair10-symbols:Deg1tair10-symbols:DEGP1UniGene:At.47511UniProt:O22609
Coordinates (TAIR10) chr3:-:10366659..10368864
Molecular Weight (calculated) 46676.60 Da
IEP (calculated) 6.41
GRAVY (calculated) 0.03
Length 439 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTTSCSLL LSSTLFLHSP PSSHLSFFNL SSSRSSPISL YPIRSKRYFR ILSKLSLNDN NRDDDDDTLH FTPFSAVKPF FLLCTSVALS FSLFAASPAV
101: ESASAFVVST PKKLQTDELA TVRLFQENTP SVVYITNLAV RQDAFTLDVL EVPQGSGSGF VWDKQGHIVT NYHVIRGASD LRVTLADQTT FDAKVVGFDQ
201: DKDVAVLRID APKNKLRPIP VGVSADLLVG QKVFAIGNPF GLDHTLTTGV ISGLRREISS AATGRPIQDV IQTDAAINPG NSGGPLLDSS GTLIGINTAI
301: YSPSGASSGV GFSIPVDTVG GIVDQLVRFG KVTRPILGIK FAPDQSVEQL GVSGVLVLDA PPSGPAGKAG LQSTKRDGYG RLVLGDIITS VNGTKVSNGS
401: DLYRILDQCK VGDEVTVEVL RGDHKEKISV TLEPKPDES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)