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AT3G27920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 0
Curator
Summary (TAIR10)
Encodes a Myb-like protein that is required for induction of trichome development.
Computational
Description (TAIR10)
myb domain protein 0 (MYB0); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 23 (TAIR:AT5G40330.1); Has 9086 Blast hits to 8334 proteins in 551 species: Archae - 0; Bacteria - 0; Metazoa - 839; Fungi - 495; Plants - 5921; Viruses - 3; Other Eukaryotes - 1828 (source: NCBI BLink).
Protein Annotations
BioGrid:7745DIP:DIP-38476NeggNOG:COG5147eggNOG:KOG0048EMBL:AB006078EMBL:AF263690EMBL:AF263691
EMBL:AF263692EMBL:AF263693EMBL:AF263694EMBL:AF263695EMBL:AF263696EMBL:AF263697EMBL:AF263698
EMBL:AF263699EMBL:AF263700EMBL:AF263701EMBL:AF263702EMBL:AF263703EMBL:AF263704EMBL:AF263705
EMBL:AF263706EMBL:AF263707EMBL:AF263708EMBL:AF263709EMBL:AF263710EMBL:AF263711EMBL:AF263712
EMBL:AF263713EMBL:AF263714EMBL:AF263715EMBL:AF263718EMBL:AF263719EMBL:AF495524EMBL:AJ243899
EMBL:AJ243900EMBL:AP000371EMBL:AY519590EMBL:CP002686EMBL:L22786EMBL:M79448EnsemblPlants:AT3G27920
EnsemblPlants:AT3G27920.1entrez:822415ExpressionAtlas:P27900Gene3D:1.10.10.60GeneID:822415Genevisible:P27900GO:GO:0001708
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009740GO:GO:0032880GO:GO:0048629
GO:GO:2000039Gramene:AT3G27920.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF625InParanoid:P27900IntAct:P27900InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT3G27920KO:K09422OMA:GQWNRIVPaxDb:P27900Pfam:P27900
Pfam:PF00249Pfscan:PS51294PhylomeDB:P27900PIR:A39289PRIDE:P27900PRO:PR:P27900PROSITE:PS51294
ProteinModelPortal:P27900Proteomes:UP000006548RefSeq:NP_189430.1SMART:SM00717SMR:P27900STRING:3702.AT3G27920.1SUPFAM:SSF46689
TAIR:AT3G27920tair10-symbols:ATGL1tair10-symbols:ATMYB0tair10-symbols:GL1tair10-symbols:MYB0UniGene:At.42881UniProt:I6P6H3
UniProt:P27900
Coordinates (TAIR10) chr3:-:10361945..10363506
Molecular Weight (calculated) 26339.90 Da
IEP (calculated) 7.18
GRAVY (calculated) -0.78
Length 228 amino acids
Sequence (TAIR10)
(BLAST)
001: MRIRRRDEKE NQEYKKGLWT VEEDNILMDY VLNHGTGQWN RIVRKTGLKR CGKSCRLRWM NYLSPNVNKG NFTEQEEDLI IRLHKLLGNR WSLIAKRVPG
101: RTDNQVKNYW NTHLSKKLVG DYSSAVKTTG EDDDSPPSLF ITAATPSSCH HQQENIYENI AKSFNGVVSA SYEDKPKQEL AQKDVLMATT NDPSHYYGNN
201: ALWVHDDDFE LSSLVMMNFA SGDVEYCL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)