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AT3G27785.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 118
Curator
Summary (TAIR10)
putative transcription factor (MYB118)
Computational
Description (TAIR10)
myb domain protein 118 (MYB118); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: rosette leaf, embryo, fruit, cauline leaf, flower; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 115 (TAIR:AT5G40360.1); Has 9843 Blast hits to 8432 proteins in 561 species: Archae - 0; Bacteria - 0; Metazoa - 1160; Fungi - 755; Plants - 5742; Viruses - 7; Other Eukaryotes - 2179 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AB018114EMBL:CP002686
EMBL:DQ446708EnsemblPlants:AT3G27785EnsemblPlants:AT3G27785.1entrez:822399
Gene3D:1.10.10.60GeneID:822399GO:GO:0005634GO:GO:0010439
GO:GO:0043565GO:GO:0045893GO:GO:1904095GO:GO:2000692
Gramene:AT3G27785.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF518InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT3G27785KO:K09422
OMA:ANEDTIMPfam:PF13921Pfscan:PS51294PhylomeDB:Q9LVW4
PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_189416.2SMART:SM00717
SMR:Q9LVW4STRING:3702.AT3G27785.1SUPFAM:SSF46689TAIR:AT3G27785
tair10-symbols:ATMYB118tair10-symbols:MYB118tair10-symbols:PGA37UniGene:At.8032
UniProt:Q9LVW4
Coordinates (TAIR10) chr3:-:10288767..10290712
Molecular Weight (calculated) 49494.90 Da
IEP (calculated) 7.69
GRAVY (calculated) -0.68
Length 437 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFESVFKMH YPYLAAVIYD DSSTLKDFHP SLTDDFSCVH NVHHKPSMPH TYEIPSKETI RGITPSPCTE AFEACFHGTS NDHVFFGMAY TTPPTIEPNV
101: SHVSHDNTMW ENDQNQGFIF GTESTLNQAM ADSNQFNMPK PLLSANEDTI MNRRQNNQVM IKTEQIKKKN KRFQMRRICK PTKKASIIKG QWTPEEDKLL
201: VQLVDLHGTK KWSQIAKMLQ GRVGKQCRER WHNHLRPDIK KDGWTEEEDI ILIKAHKEIG NRWAEIARKL PGRTENTIKN HWNATKRRQH SRRTKGKDEI
301: SLSLGSNTLQ NYIRSVTYND DPFMTANANA NIGPRNMRGK GKNVMVAVSE YDEGECKYIV DGVNNLGLED GRIKMPSLAA MSASGSASTS GSASGSGSGV
401: TMEIDEPMTD SWMVMHGCDE VMMNEIALLE MIAHGRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)