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AT3G27740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : carbamoyl phosphate synthetase A
Curator
Summary (TAIR10)
carbamoyl phosphate synthetase small subunit mRNA (carA),
Computational
Description (TAIR10)
carbamoyl phosphate synthetase A (CARA); FUNCTIONS IN: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity, catalytic activity; INVOLVED IN: cellular response to phosphate starvation; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Carbamoyl phosphate synthase, GATase domain (InterPro:IPR001317), Carbamoyl phosphate synthase, small subunit, N-terminal (InterPro:IPR002474), Glutamine amidotransferase type 1 (InterPro:IPR017926), Carbamoyl phosphate synthase, small subunit (InterPro:IPR006274), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: anthranilate synthase beta subunit 1 (TAIR:AT1G25220.1); Has 23531 Blast hits to 23511 proteins in 4128 species: Archae - 520; Bacteria - 13864; Metazoa - 1675; Fungi - 510; Plants - 198; Viruses - 0; Other Eukaryotes - 6764 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G27740-MONOMERBioGrid:7726EC:6.3.5.5eggNOG:COG0505eggNOG:ENOG410IUMVEMBL:AB018114EMBL:AY046004
EMBL:AY079315EMBL:CP002686EMBL:U73175EnsemblPlants:AT3G27740EnsemblPlants:AT3G27740.1entrez:822396ExpressionAtlas:Q9LVW7
Gene3D:3.40.50.880Gene3D:3.50.30.20GeneID:822396Genevisible:Q9LVW7GO:GO:0000050GO:GO:0004088GO:GO:0005524
GO:GO:0005951GO:GO:0006207GO:GO:0006526GO:GO:0006541GO:GO:0009507GO:GO:0009570GO:GO:0016036
GO:GO:0044205gramene_plant_reactome:1119495gramene_plant_reactome:6874613HAMAP:MF_01209hmmpanther:PTHR11405hmmpanther:PTHR11405:SF37HOGENOM:HOG000038087
InParanoid:Q9LVW7IntAct:Q9LVW7InterPro:IPR002474InterPro:IPR006274InterPro:IPR017926InterPro:IPR029062KEGG:00240+6.3.5.5
KEGG:00250+6.3.5.5MEROPS:C26.A04OMA:TNAHIGNPaxDb:Q9LVW7Pfam:PF00117Pfam:PF00988Pfam:Q9LVW7
Pfscan:PS51273PhylomeDB:Q9LVW7PRIDE:Q9LVW7PRO:PR:Q9LVW7PROSITE:PS51273ProteinModelPortal:Q9LVW7Proteomes:UP000006548
RefSeq:NP_566824.1SMART:SM01097SMR:Q9LVW7STRING:3702.AT3G27740.1SUPFAM:0034973SUPFAM:SSF52021SUPFAM:SSF52317
TAIR:AT3G27740tair10-symbols:CARATIGRfam:TIGR01368TIGRFAMs:TIGR01368UniGene:At.8030UniPathway:UPA00068UniPathway:UPA00070
UniProt:Q9LVW7
Coordinates (TAIR10) chr3:-:10281470..10283792
Molecular Weight (calculated) 47061.60 Da
IEP (calculated) 5.89
GRAVY (calculated) -0.30
Length 430 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMATRTLGF VLPTSLSSQP SFDRRGGGFR VSVIRCSTSP LTFPTSGVVE KPWTSYNARL VLEDGSIWPA KSFGAPGTRI AELVFNTSLT GYQEILTDPS
101: YAGQFVLMTN PQIGNTGVNP DDEESGQCFL TGLVIRNLSI STSNWRCTKT LADYLTERDI MGVYDLDTRA ITRRLREDGS LIGVLSTEQS KTDDELLQMS
201: RSWDIVGIDL ISDVSCKSPY EWVDKTNAEW DFNTNSRDGK SYKVIAYDFG IKQNILRRLS SYGCQITVVP STFPAAEALK MNPDGILFSN GPGDPSAVPY
301: AVETVKELLG KVPVYGICMG HQLLGQALGG KTFKMKFGHH GGNHPVRNNR TGQVEISAQN HNYAVDPASL PGGVEVTHVN LNDGSCAGLS FPEMNVMSLQ
401: YHPEASPGPH DSDNAFREFI ELMKRSKQSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)