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AT3G27690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : photosystem II light harvesting complex gene 2.3
Curator
Summary (TAIR10)
Encodes Lhcb2.4. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.
Computational
Description (TAIR10)
photosystem II light harvesting complex gene 2.3 (LHCB2.3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.1 (TAIR:AT2G05100.1); Has 2373 Blast hits to 2310 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2058; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IU0XeggNOG:ENOG410ZHBUEMBL:AB018114EMBL:AF134125EMBL:AF370557EMBL:BT006298EMBL:CP002686
EnsemblPlants:AT3G27690EnsemblPlants:AT3G27690.1entrez:822391Gene3D:1.10.3460.10GeneID:822391GO:GO:0009522GO:GO:0009535
GO:GO:0009579GO:GO:0009637GO:GO:0009768GO:GO:0009941GO:GO:0010114GO:GO:0010218GO:GO:0010287
GO:GO:0016021GO:GO:0016168GO:GO:0018298GO:GO:0031409GO:GO:0046872Gramene:AT3G27690.1hmmpanther:PTHR21649
hmmpanther:PTHR21649:SF8HOGENOM:HOG000238032InterPro:IPR001344InterPro:IPR022796InterPro:IPR023329KEGG:ath:AT3G27690KO:K08913
OMA:RIIMRRTPANTHER:PTHR21649Pfam:PF00504PhylomeDB:Q9XF87PIR:T52322Proteomes:UP000006548RefSeq:NP_189406.1
SMR:Q9XF87STRING:3702.AT3G27690.1SUPFAM:0043399SUPFAM:SSF103511TAIR:AT3G27690tair10-symbols:LHCB2tair10-symbols:LHCB2.3
tair10-symbols:LHCB2.4UniGene:At.63397UniGene:At.71997UniGene:At.8025UniProt:Q9XF87
Coordinates (TAIR10) chr3:+:10256002..10256921
Molecular Weight (calculated) 28804.30 Da
IEP (calculated) 5.70
GRAVY (calculated) -0.12
Length 266 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSAIQHSS FAGQTTLKPS NDLLRKIGAS NGGGRIIMRR TVKSTPQSIW YGPDRPKYLG PFSENTPSYL TGEYPGDYGW DTAGLSADPE TFAKNRELEV
101: IHSRWAMLGA LGCTFPEILS KNGVKFGEAV WFKAGSQIFS EGGLDYLGNP NLIHAQSILA IWACQVVLMG FIEGYRIGGG PLGEGLDPLY PGGAFDPLNL
201: AEDPEAFSEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPI ENLFDHIADP VANNAWAYAT NFVPGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)