AT3G27640.1
|
Subcellular Consensus
(Prediction and Experimental)  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? What is ASURE? SUBAcon computations |
|||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||
| FP Images |
Arabidopsis cell culture (plastidal marker)
|
||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 36714 Blast hits to 22017 proteins in 645 species: Archae - 42; Bacteria - 5151; Metazoa - 14249; Fungi - 8186; Plants - 4562; Viruses - 0; Other Eukaryotes - 4524 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:10232307..10235467 | ||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59400.50 Da | ||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.29 | ||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||||||||
| Length | 535 amino acids | ||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRDHTAQKIQ YPAGFRDSPM ESSRSRSVFV NIGLRELNGF RVRKRPFFAD SELICREIAG VAVEHDGIWT PPLAVSFCKT SRNSQLFAVS DEDGHVSLFN 101: SSSKKFASSA THQENTEKAR FRDWIAHYNA IFDISWIKGD SCLLTASGDQ TIKVWDVEEN KCTGVLIGHT GTVKSMCSHP TNSDLLVSGS RDGCFALWDL 201: RCKSSSHKEE FCINSTGMVK GAHLSPLSKR IRRRKAASSS ITSVLYVKDE ITIATAGAPD SALKFWDIRK LKAPFAQASP QSDPTNTKEK RSHGIVSLSQ 301: DSSGTYLTAS CKDNRIYLYN TLRLDKGPVQ SFSGCRIDSF FVRTMISPDG EYVLSGSSDG NAYIWQVNKP QVDPIILKGH DFEVTAVDWS PSEIGKVATA 401: SDDFTVRLWN IENNICTNAN ATASVSRVKR RVTALSNTEA KERLEMNRET ESPQKHSSLS SDDDYNNDQS MPIIRTPESQ KKKTSSSSSL SSLSSEEDII 501: CERTPETTFN SPSSVLNPPS SVKRRTIRDY FLVTP |
||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)