AT3G27570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Sucrase/ferredoxin-like family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Sucrase/ferredoxin-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Sucraseferredoxin-like (InterPro:IPR009737), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Sucrase/ferredoxin-like family protein (TAIR:AT5G40510.1); Has 487 Blast hits to 487 proteins in 162 species: Archae - 6; Bacteria - 90; Metazoa - 0; Fungi - 283; Plants - 71; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10214276..10216681 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41614.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.51 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||
| Length | 379 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MITKFTSPFR LIRFFNSLSS SSSICFCETL DFGVRKKTSM AEEVAENVNA VPVSEDELYG FKRSEMYSGT LAGSVGPYGR HVFLCYKSHE TWLPRVETEG 101: LPQRFAKLFK DRKADFAVET KLTVCGGGGE SDGDVLIFPE MVRYKAIQDT DVDAFVEDVL VKGKTWTSGI QEELTGSFVF VCAHGSRDKR CGVCGPVLME 201: KFEQEISSRG LSDKIFVLPC SHIGGHKYAG NLIVFSPDSA GNVSGHWYGY VTPDDVPAML DQHIAKGEII QNLSRGQMRL RPEGEEAEKE DEHKIPNGNS 301: VMVEEREPVE QKGFTGGCCQ GANGVSCCQE QAAEPVKKEG CMKLNWLKSM GKEEVLLGAA VVSAVATVAV AYSIYRRSG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)