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AT3G27550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding CRS1 / YhbY (CRM) domain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT2G28480.1); Has 9740 Blast hits to 5375 proteins in 499 species: Archae - 16; Bacteria - 3620; Metazoa - 2600; Fungi - 970; Plants - 681; Viruses - 92; Other Eukaryotes - 1761 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS9DeggNOG:KOG1990EMBL:AB025626EMBL:CP002686EnsemblPlants:AT3G27550EnsemblPlants:AT3G27550.1entrez:822377
Gene3D:3.30.110.60GeneID:822377GO:GO:0003723Gramene:AT3G27550.1hmmpanther:PTHR31426hmmpanther:PTHR31426:SF4HOGENOM:HOG000241218
InterPro:IPR001890KEGG:ath:AT3G27550ncoils:CoilOMA:MWDSEDEPfam:PF01985Pfscan:PS51295PhylomeDB:Q9LT57
PROSITE:PS51295Proteomes:UP000006548RefSeq:NP_189392.1SMART:SM01103SMR:Q9LT57STRING:3702.AT3G27550.1SUPFAM:SSF75471
TAIR:AT3G27550UniGene:At.37034UniProt:Q9LT57
Coordinates (TAIR10) chr3:-:10208010..10209899
Molecular Weight (calculated) 57006.20 Da
IEP (calculated) 8.21
GRAVY (calculated) -1.24
Length 491 amino acids
Sequence (TAIR10)
(BLAST)
001: MNQVFKGWSR GMSTSRGRSM RSKVESRMRK ESGKTLREIR RAKKLKKKLM TDEERLIYNL KRAKKKVALL LQKLKKYDLP ELPSPVHDPE LFTSEQVQAF
101: KKIGFKNKNY VPVGVRGVFG GVVQNMHMHW KFHETVQVCC DNFPKEKIKE MASMIARLSG GVVINIHNVK TIIMFRGRNY RQPKNLIPVN TLTKRKALFK
201: ARFEQALESQ KLNIKKTEQQ LRRMGVNPED PVAMASIHRV ASTFFNAIDK KEGTPYVFHG DKQSERGTSV DNREESEPGD EDSDQEELDR FIAEIEEAAD
301: KEWEEEEAAE QEESGRIRYW NREEFAGRSR TPELRSYGDA SHGFRRNDRD THSQRRPNDS DDDDDDGELD SEDDEIPKRF DRARSSNTNT RRPREDFKRR
401: SPDPRPRPRA QVRSDDDVLS DLDNTMWDSE DEEDAPPANY ISSSDDDEDE NRTVSASSSK QSRFRNNSSR DGINNSKSKS GKQRDEDWDS D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)