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AT3G27540.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.411
vacuole 0.312
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-1,4-N-acetylglucosaminyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
beta-1,4-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 17 (InterPro:IPR006813); BEST Arabidopsis thaliana protein match is: beta-1,4-N-acetylglucosaminyltransferase family protein (TAIR:AT5G14480.1); Has 1196 Blast hits to 1196 proteins in 92 species: Archae - 0; Bacteria - 43; Metazoa - 59; Fungi - 34; Plants - 126; Viruses - 4; Other Eukaryotes - 930 (source: NCBI BLink).
Protein Annotations
CAZy:GT17eggNOG:ENOG410IEQJeggNOG:ENOG410YQKPEMBL:AB025626EMBL:AY099829EMBL:BT000311EMBL:CP002686
EMBL:KJ138810EnsemblPlants:AT3G27540EnsemblPlants:AT3G27540.1entrez:822376GeneID:822376GO:GO:0003830GO:GO:0006487
GO:GO:0016021Gramene:AT3G27540.1hmmpanther:PTHR12224hmmpanther:PTHR12224:SF1HOGENOM:HOG000239213IntAct:Q9LT58InterPro:IPR006813
KEGG:00510+2.4.1.144KEGG:ath:AT3G27540KO:K00737OMA:TMSRLKCPANTHER:PTHR12224Pfam:PF04724PhylomeDB:Q9LT58
Proteomes:UP000006548Reactome:R-ATH-975574RefSeq:NP_189391.1STRING:3702.AT3G27540.1TAIR:AT3G27540TMHMM:TMhelixUniGene:At.37037
unipathway:UPA00378UniProt:Q9LT58
Coordinates (TAIR10) chr3:+:10205489..10206888
Molecular Weight (calculated) 45663.90 Da
IEP (calculated) 8.56
GRAVY (calculated) -0.29
Length 390 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDGYINSKK TDDICEDVCG QGSKAAKTIS RLKCVLKGFD LRTYLFLFVL MPFGILAIYL HGQKFTYFFR PLWESPPKPF QTIPHYYNEN VTMESLCSLH
101: GWGIRDSPRR VFDAVLFSNE KDLLTVRWNE LYPYVTQFVI LESNSTFTGL PKPLVFKSNK DQFKFVEPRL TYGTIGGRFR KGENPFVEEA YQRVALDQLL
201: RIAGIQEDDL LIMSDVDEIP SAHTINLLRW CDDIPPVLHL QLKNYLYSFE YYVDSKSWRA SIHRYSPGKT RYAHFRQSNV MLADSGWHCS FCFRYISEFI
301: FKMKAYSHSD RVRFSHYLNP RRIQDVICKG TDLFDMLPEE YTFKEIIGKM GPVPRSYSAV HLPSYLLYNA EQYKYLLPGN CIREKQTGFI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)