suba logo
AT3G27530.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21166475 (2011): cytosol
  • PMID:18433157 (2008): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : golgin candidate 6
Curator
Summary (TAIR10)
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC6 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (225 aa) portion of the protein.
Computational
Description (TAIR10)
golgin candidate 6 (GC6); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, Golgi vesicle transport, vesicle fusion with Golgi apparatus; LOCATED IN: cytosol, Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uso1/p115 like vesicle tethering protein, C-terminal (InterPro:IPR006955), Armadillo-type fold (InterPro:IPR016024), Uso1/p115 like vesicle tethering protein, head region (InterPro:IPR006953); Has 8674 Blast hits to 6651 proteins in 794 species: Archae - 167; Bacteria - 1154; Metazoa - 4083; Fungi - 784; Plants - 382; Viruses - 31; Other Eukaryotes - 2073 (source: NCBI BLink).
Protein Annotations
BioGrid:7705eggNOG:ENOG410XRCGeggNOG:KOG0946EMBL:AB025626EMBL:AY056118EMBL:BT001017EMBL:CP002686
EMBL:EU249327EnsemblPlants:AT3G27530EnsemblPlants:AT3G27530.1entrez:822375GeneID:822375Genevisible:B0F9L4GO:GO:0000139
GO:GO:0005783GO:GO:0005794GO:GO:0005795GO:GO:0005829GO:GO:0006888GO:GO:0008565GO:GO:0009791
GO:GO:0012507GO:GO:0032527GO:GO:0045056GO:GO:0048211GO:GO:0048280GO:GO:0061025Gramene:AT3G27530.1
hmmpanther:PTHR10013HOGENOM:HOG000264896InParanoid:B0F9L4InterPro:IPR006953InterPro:IPR006955InterPro:IPR016024InterPro:IPR024095
iPTMnet:B0F9L4KEGG:ath:AT3G27530ncoils:CoilOMA:ETSQGPKPANTHER:PTHR10013PaxDb:B0F9L4Pfam:B0F9L4
Pfam:PF04869Pfam:PF04871PhylomeDB:B0F9L4PRIDE:B0F9L4PRO:PR:B0F9L4ProteinModelPortal:B0F9L4Proteomes:UP000006548
Reactome:R-ATH-6807878RefSeq:NP_566820.1SMR:B0F9L4STRING:3702.AT3G27530.1SUPFAM:SSF48371TAIR:AT3G27530tair10-symbols:GC6
tair10-symbols:MAG4UniGene:At.23625UniProt:B0F9L4
Coordinates (TAIR10) chr3:-:10193778..10199659
Molecular Weight (calculated) 101840.00 Da
IEP (calculated) 4.58
GRAVY (calculated) -0.24
Length 914 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLASRYKGV VGMVFGDNQS SNEDSYIQRL LDRISNGTLP DDRRTAIVEL QSVVAESNAA QLAFGAAGFP VIVGILKDQR DDLEMVRGAL ETLLGALTPI
101: DHARAQKTEV QAALMNSDLL SREAENITLL LSLLEEEDFY VRYYTLQILT ALLMNSQNRL QEAILTTPRG ITRLMDMLMD REVIRNEALL LLTHLTREAE
201: EIQKIVVFEG AFEKIFSIIK EEGGSDGDVV VQDCLELLNN LLRSSSSNQI LLRETMGFEP IISILKLRGI TYKFTQQKTV NLLSALETIN MLIMGRADTE
301: PGKDSNKLAN RTVLVQKKLL DYLLMLGVES QWAPVAVRCM TFKCIGDLID GHPKNRDILA SKVLGEDRQV EPALNSILRI ILQTSSIQEF VAADYVFKTF
401: CEKNTEGQTM LASTLIPQPH PTSRDHLEDD VHMSFGSMLL RGLCSGEADG DLETCCRAAS ILSHVVKDNL RCKEKALKIV LESPMPSMGT PEPLFQRIVR
501: YLAVASSMKS KEKSSTLGKS YIQQIILKLL VTWTVDCPTA VQCFLDSRHH LTFLLELVTD PAATVCIRGL ASILLGECVI YNKSIENGKD AFSVVDAVGQ
601: KMGLTSYFSK FEEMQNSFIF SPSKKPPQGY KPLTRTPTPS EAEINEVDEV DEMVKGNEDH PMLLSLFDAS FIGLVKSLEG NIRERIVDVY SRPKSEVAVV
701: PADLEQKSGE NEKDYINRLK AFIEKQCSEI QNLLARNAAL AEDVASSGRN EQSQGSEQRA STVMDKVQME SIRRELQETS QRLETVKAEK AKIESEASSN
801: KNMAAKLEFD LKSLSDAYNS LEQANYHLEQ EVKSLKGGES PMQFPDIEAI KEEVRKEAQK ESEDELNDLL VCLGQEESKV EKLSAKLIEL GVDVDKLLED
901: IGDESEAQAE SEED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)