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AT3G27420.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40600.1); Has 43 Blast hits to 43 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYAVeggNOG:ENOG410ZFW4EMBL:AY072433EMBL:BT002171
EMBL:CP002686EnsemblPlants:AT3G27420EnsemblPlants:AT3G27420.1entrez:822363
GeneID:822363Gramene:AT3G27420.1hmmpanther:PTHR22880hmmpanther:PTHR22880:SF171
IntAct:Q8VY55InterPro:IPR027353KEGG:ath:AT3G27420ncoils:Coil
OMA:VATCRPMPfam:PF17035Pfscan:PS51525PhylomeDB:Q8VY55
PROSITE:PS51525Proteomes:UP000006548RefSeq:NP_566817.1SMR:Q8VY55
STRING:3702.AT3G27420.1TAIR:AT3G27420UniGene:At.37062UniProt:Q8VY55
Coordinates (TAIR10) chr3:+:10148949..10150139
Molecular Weight (calculated) 27544.60 Da
IEP (calculated) 5.43
GRAVY (calculated) -0.58
Length 244 amino acids
Sequence (TAIR10)
(BLAST)
001: MPKRTAEACP SSEIQRSRGD TFGSYRSQVA ELLSLGERIS HHDQQEANER HSESVIGAGM SNVEKDNLNV LLRQCVRNLS PEVDEMQECV RSLYLISQLG
101: NKCQSSSPSD FVPEETGGAR EDDIQLLLRS DSDMVKNITS QYSNVLLSKL DNMQQELERL LDDVVATCRP MTRGEIRELQ KSIKELPERN LNRVAEIVGN
201: HCIASGRDFN DKVIVNLDQA DKVMLWRLHF YVGAVKRPRS SLPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)