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AT3G27400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G63180.1); Has 1638 Blast hits to 1629 proteins in 272 species: Archae - 0; Bacteria - 741; Metazoa - 0; Fungi - 189; Plants - 699; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G27400-MONOMERCAZy:PL1EC:4.2.2.2eggNOG:COG3866eggNOG:ENOG410JXFAEMBL:AB024028EMBL:CP002686
EnsemblPlants:AT3G27400EnsemblPlants:AT3G27400.1entrez:822361Gene3D:2.160.20.10GeneID:822361Genevisible:Q9LTZ0GO:GO:0030570
GO:GO:0045490GO:GO:0046872Gramene:AT3G27400.1hmmpanther:PTHR31683hmmpanther:PTHR31683:SF29InParanoid:Q9LTZ0InterPro:IPR002022
InterPro:IPR011050InterPro:IPR012334InterPro:IPR018082KEGG:00040+4.2.2.2KEGG:ath:AT3G27400KO:K01728OMA:NGNIRDS
PaxDb:Q9LTZ0Pfam:PF00544Pfam:Q9LTZ0PRIDE:Q9LTZ0PRINTS:PR00807PRO:PR:Q9LTZ0ProteinModelPortal:Q9LTZ0
Proteomes:UP000006548RefSeq:NP_189376.1SMART:SM00656SMR:Q9LTZ0STRING:3702.AT3G27400.1SUPFAM:SSF51126TAIR:AT3G27400
TMHMM:TMhelixUniGene:At.23327UniPathway:UPA00545UniProt:Q9LTZ0
Coordinates (TAIR10) chr3:+:10140323..10143023
Molecular Weight (calculated) 45987.20 Da
IEP (calculated) 7.95
GRAVY (calculated) -0.42
Length 412 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSYSNNHFA YAFLLLLTIG NTLAFSSSLP DHVQDPNLVV DDVNRSVFNA SRRSLAYLSC RTGNPIDDCW RCDPNWETNR QRLADCAIGF GKNAIGGRKG
101: RIYVVTDPAN DDPVNPRPGT LRYAVTQEEP LWIIFKRDMV IRLKKELIIT SFKTIDGRGS SVHITDGPCL KIHYATNIII HGINIHDCKP GSGGMIKDGP
201: HHTGWWMQSD GDAVAIFGGK HVWIDHCSLS NCDDGLIDAI HGSTAITISN NHMTHHDKVM LLGHSDSYTQ DKNMQVTIAF NHFGEGLVQR MPRCRHGYFH
301: VVNNDYTHWE MYAIGGSASP TIYSQGNRFL APNTRFNKEV TKHEDAPESK WRDWNWRSEG DMLLNGAYFR ESGAEAPSTY ARASSLSARP SSLVGSITTT
401: AGTLSCRRGR RC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)