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AT3G27390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:24030099 (2013): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:23110452 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40640.1); Has 101 Blast hits to 99 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIWBeggNOG:ENOG410Y9F4EMBL:AB024028EMBL:BT002384
EMBL:CP002686EnsemblPlants:AT3G27390EnsemblPlants:AT3G27390.1entrez:822360
GeneID:822360Genevisible:Q8GUM4GO:GO:0005886GO:GO:0016021
Gramene:AT3G27390.1hmmpanther:PTHR31133hmmpanther:PTHR31133:SF3HOGENOM:HOG000239224
InParanoid:Q8GUM4iPTMnet:Q8GUM4KEGG:ath:AT3G27390OMA:VAICKSP
PaxDb:Q8GUM4Pfam:Q8GUM4PRIDE:Q8GUM4PRO:PR:Q8GUM4
Proteomes:UP000006548RefSeq:NP_189375.2STRING:3702.AT3G27390.1TAIR:AT3G27390
TMHMM:TMhelixUniGene:At.37069UniProt:Q8GUM4
Coordinates (TAIR10) chr3:-:10133372..10136111
Molecular Weight (calculated) 65500.20 Da
IEP (calculated) 8.26
GRAVY (calculated) 0.24
Length 588 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPPIGFRAS LFQFLLFLPY FIGLLFLGFI KGIVLCPLVC LVVTIGNSAV ILSLLPVHIV WTFYSIVSAK QVGPILKIFL CLCLPAAIIL WPIVGILGSV
101: LGGALYGFFS PIFATFDAVG EGKPYQFFHC FYDGTWSTMQ RSFTVVRDFK DVCFHSYFSL MDELKQSCPD RKYYEIRLLQ LPGALVVSVL GILVDPPVIS
201: LVAICKSPYM LFKGWHRLFH DLIGREGPFL ETMCVPIAGL AILLWPLAVT GAVIGSVISS IFLGAYAGVV SYQESSFYYG LCYIVASVSI YDEYSTDILD
301: LPEGSCFPRP KYRRKDEEPT PFSGPVPRLG SVKNASSMRG GSVRVPMIDI KPLDLLNELF VECRRYGEVL ATKGLINSKD IEEARSSKGS QVISVGLPAY
401: GLLYEILRSV KANSSGLLLS DGVTEITTMN RPKDVFFDWF LNPFLILKEQ MKATNLSEEE EEYLGRLVLL FGDPERLKSS NAISASPPLT ERKRAELDAF
501: ARRMQGLTKT VSRYPTFRRH FVALVKKLSE DLDLKDNNSA KDESITEPPA PVKIISRIFS QRSFRRKGSV NGSDQESQKG VSRNVDIV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)