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AT3G27210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.980
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40860.1); Has 133 Blast hits to 98 proteins in 25 species: Archae - 0; Bacteria - 6; Metazoa - 32; Fungi - 7; Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J27FeggNOG:ENOG410YNTSEMBL:AP000381EMBL:AY049232EMBL:AY079119EMBL:CP002686EnsemblPlants:AT3G27210
EnsemblPlants:AT3G27210.1entrez:822340GeneID:822340Genevisible:Q9LK32GO:GO:0005886Gramene:AT3G27210.1hmmpanther:PTHR34280
hmmpanther:PTHR34280:SF2HOGENOM:HOG000155287InParanoid:Q9LK32IntAct:Q9LK32iPTMnet:Q9LK32KEGG:ath:AT3G27210OMA:HHRCLPG
PaxDb:Q9LK32Pfam:Q9LK32PhylomeDB:Q9LK32PRIDE:Q9LK32PRO:PR:Q9LK32ProteinModelPortal:Q9LK32Proteomes:UP000006548
RefSeq:NP_566811.1STRING:3702.AT3G27210.1TAIR:AT3G27210UniGene:At.6167UniProt:Q9LK32
Coordinates (TAIR10) chr3:-:10045458..10047222
Molecular Weight (calculated) 26001.90 Da
IEP (calculated) 10.13
GRAVY (calculated) -0.99
Length 234 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSSSSSLN NSPIRADSMV TPESQMTVND NKNDNVSILS PSVKKSFESP RKSTSIPANN NLTPVKSRWS FSSSKKSFGS KDETFFDSQP WLQSDSDDDF
101: HSVNGDFTPS LGNTPKSSFS DRPPRFHNLI FHEKKPSRGS SSPAPLPRRK KLGELFRDSI REEREESGSS SAISTPYLSG ANSREFNDTA IEKEEKKKSN
201: WHHHRCLPGF SSCGGSFMER RKKMSSETPV VAVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)