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AT3G27110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22274653 (2012): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peptidase family M48 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peptidase family M48 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M48 (InterPro:IPR001915); Has 2654 Blast hits to 2654 proteins in 909 species: Archae - 247; Bacteria - 2042; Metazoa - 0; Fungi - 12; Plants - 34; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0501eggNOG:ENOG410IKQEEMBL:AB026649EMBL:AK316844EMBL:AY045604EMBL:BT002704EMBL:CP002686
EnsemblPlants:AT3G27110EnsemblPlants:AT3G27110.1EnsemblPlants:AT3G27110.2entrez:822330GeneID:822330GO:GO:0004222Gramene:AT3G27110.1
Gramene:AT3G27110.2hmmpanther:PTHR10120hmmpanther:PTHR10120:SF21InterPro:IPR001915KEGG:ath:AT3G27110MEROPS:M48.A02OMA:FAMRGKQ
Pfam:PF01435PhylomeDB:Q9LSC4Proteomes:UP000006548RefSeq:NP_566808.1RefSeq:NP_850640.1SMR:Q9LSC4STRING:3702.AT3G27110.1
TAIR:AT3G27110UniGene:At.6116UniProt:Q9LSC4
Coordinates (TAIR10) chr3:+:9998006..9999892
Molecular Weight (calculated) 37950.20 Da
IEP (calculated) 9.32
GRAVY (calculated) 0.06
Length 344 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVSVSAPVL SLCYNQSGEL SRSLGYRLPK KVGFSSGRRS VSYIGFGAEK VGRFRVRVPI CRAVPPLLFK DLDADDFRHP FDKQNTLLLR AIPGLNEFGK
101: ALLGSMTEQI MLLENIGTSV LVSKNQLSDL HGLLVEAAEI LNIEAPDLYV RQSPVPNAYT LAISGKKPFI VVHTSLIELL TSAELQAVLA HELGHLKCDH
201: GVWLTFANIL TLGAYTVPAF GQMIARTLEE QLLRWLRSAE LTCDRAALLV AQDPKVVVSV LMKLAGGCPS IADQLNVDAF LEQARSYDKA SSSPLGWYIR
301: NAQTSQLSHP LPVLRAREID EWSRSLEYKS LLKRANRKST VQKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)