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AT3G27000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.982
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : actin related protein 2
Curator
Summary (TAIR10)
encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. its transcript level is down regulated by light and is expressed in very low levels in all organs examined.
Computational
Description (TAIR10)
actin related protein 2 (ARP2); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: in 7 processes; LOCATED IN: Arp2/3 protein complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: Actin-like ATPase superfamily protein (TAIR:AT2G42100.1); Has 13000 Blast hits to 12789 proteins in 2576 species: Archae - 4; Bacteria - 10; Metazoa - 5530; Fungi - 3345; Plants - 1585; Viruses - 2; Other Eukaryotes - 2524 (source: NCBI BLink).
Protein Annotations
BioGrid:7647eggNOG:COG5277eggNOG:KOG0677EMBL:AB026649EMBL:AF095912EMBL:AF507910EMBL:BK000428
EMBL:CP002686EnsemblPlants:AT3G27000EnsemblPlants:AT3G27000.1entrez:822317GeneID:822317Genevisible:Q9LSD6GO:GO:0000902
GO:GO:0005524GO:GO:0005737GO:GO:0005885GO:GO:0007015GO:GO:0007275GO:GO:0009825GO:GO:0010090
GO:GO:0030029GO:GO:0030036GO:GO:0034314Gramene:AT3G27000.1hmmpanther:PTHR11937hmmpanther:PTHR11937:SF37HOGENOM:HOG000233340
IntAct:Q9LSD6InterPro:IPR004000InterPro:IPR027306KEGG:ath:AT3G27000KO:K17260OMA:STYIAIQPANTHER:PTHR11937
PANTHER:PTHR11937:SF37PaxDb:Q9LSD6Pfam:PF00022Pfam:Q9LSD6PhylomeDB:Q9LSD6PRIDE:Q9LSD6PRINTS:PR00190
PRO:PR:Q9LSD6ProteinModelPortal:Q9LSD6Proteomes:UP000006548RefSeq:NP_189336.1SMART:SM00268SMR:Q9LSD6STRING:3702.AT3G27000.1
SUPFAM:SSF53067TAIR:AT3G27000tair10-symbols:ARP2tair10-symbols:ATARP2tair10-symbols:WRMUniGene:At.37122UniProt:Q9LSD6
Coordinates (TAIR10) chr3:-:9952787..9955784
Molecular Weight (calculated) 44358.60 Da
IEP (calculated) 5.33
GRAVY (calculated) -0.29
Length 389 amino acids
Sequence (TAIR10)
(BLAST)
001: MDNKNVVVCD NGTGYVKCGF AGENFPTSVF PCVVGRPLLR YEESLMEQQV KDIVVGETCS ELRHQLDINY PVHNGIVQNW DDMEHVWDHA FYNELKINPS
101: DCKILLTDPP LNPSKNREKM IETMFEKYNF AGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITAYL VDLLSRRGYA
201: MNKTADFETV REIKEKLCYI SYDYKRESQL GLETTILVKN YTLPDGRVIK VGTERFQAPE ALFTPELIDV EGDGMADMVF RCIQEMDIDN RMMLYQHIVL
301: SGGSTMYPGL PSRLEKEIQD RYLDTVLKGN KDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDAPEFWI NREDYMEEGI NCLNKMSQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)