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AT3G26932.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : dsRNA-binding protein 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
dsRNA-binding protein 3 (DRB3); FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: dsRNA-binding protein 5 (TAIR:AT5G41070.1); Has 827 Blast hits to 709 proteins in 201 species: Archae - 0; Bacteria - 347; Metazoa - 113; Fungi - 0; Plants - 307; Viruses - 2; Other Eukaryotes - 58 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J7M3eggNOG:ENOG410ZZN4EMBL:AK222128EMBL:AP000602
EMBL:BT012284EMBL:CP002686EnsemblPlants:AT3G26932EnsemblPlants:AT3G26932.1
EnsemblPlants:AT3G26932.2entrez:822310Gene3D:3.30.160.20GeneID:822310
Genevisible:Q9LJF5GO:GO:0003723Gramene:AT3G26932.1Gramene:AT3G26932.2
hmmpanther:PTHR10910hmmpanther:PTHR10910:SF110HOGENOM:HOG000243232InParanoid:Q9LJF5
IntAct:Q9LJF5InterPro:IPR014720KEGG:ath:AT3G26932ncoils:Coil
OMA:AWFSLRKPaxDb:Q9LJF5Pfam:PF00035Pfam:Q9LJF5
Pfscan:PS50137PhylomeDB:Q9LJF5PRO:PR:Q9LJF5PROSITE:PS50137
ProteinModelPortal:Q9LJF5Proteomes:UP000006548RefSeq:NP_001030779.2RefSeq:NP_189329.3
SMART:SM00358SMR:Q9LJF5STRING:3702.AT3G26932.1SUPFAM:SSF54768
TAIR:AT3G26932tair10-symbols:DRB3UniGene:At.37133UniProt:Q9LJF5
Coordinates (TAIR10) chr3:-:9930460..9931714
Molecular Weight (calculated) 40075.60 Da
IEP (calculated) 10.22
GRAVY (calculated) -0.71
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)