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AT3G26930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein with RNI-like/FBD-like domains
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: Protein with RNI-like/FBD-like domains (TAIR:AT4G13965.1); Has 974 Blast hits to 953 proteins in 26 species: Archae - 0; Bacteria - 8; Metazoa - 17; Fungi - 0; Plants - 945; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
EMBL:AP000602EMBL:AY924775EMBL:CP002686EnsemblPlants:AT3G26930
EnsemblPlants:AT3G26930.1entrez:822309Gene3D:3.80.10.10GeneID:822309
Gramene:AT3G26930.1hmmpanther:PTHR32212hmmpanther:PTHR32212:SF126InterPro:IPR001611
InterPro:IPR006566InterPro:IPR013101InterPro:IPR032675KEGG:ath:AT3G26930
OMA:YLELHIYPfam:PF07723Pfam:PF08387Pfscan:PS51450
PhylomeDB:Q9LJF7PROSITE:PS51450Proteomes:UP000006548RefSeq:NP_189328.2
SMART:SM00579SMR:Q9LJF7SUPFAM:SSF52047TAIR:AT3G26930
UniGene:At.53514UniProt:Q9LJF7
Coordinates (TAIR10) chr3:+:9925931..9927351
Molecular Weight (calculated) 47009.80 Da
IEP (calculated) 5.32
GRAVY (calculated) -0.05
Length 409 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVLSKRWRS LWKMLPRLKF DDWMFPDNVN RCLLSHQASF LQSLHLVIDY DFVSHMHTGI LMGIAFGRHI RELVLYVNGF QESFTFPLSL CNCESLETLT
101: LGHNVLIDVP SPVFLKSLRT LHLDGVEYTD DESVVNLLSG CISLENLVVH RVIQADVTTF TIAVPSLKRL TLTTEFDDDE DSVYVINAPS LKYLKILGDK
201: AYLIENSPEL VEVSLTDRQV TVDGYPIASY VENLLRSLTS VKRMSLKISS YLEIKFPTGS IFYQLVSLEL YTNKAEWWNL LVLMLDSSPK LQVLKLNGKL
301: SGENNHLASM NWDQPKNIPG CLLFNLETFI WKGCKRIGED EKEVAKYILR NTNRLKRATF TREIYEENNS QDMFENLEMV EELESVVRAS KSCKLVFEST
401: LWSLSNYDV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)