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AT3G26922.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.589
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2288 Blast hits to 2252 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 2284; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JN35eggNOG:ENOG4111DD1EMBL:AP000602EMBL:CP002686
EnsemblPlants:AT3G26922EnsemblPlants:AT3G26922.1entrez:7922367Gene3D:3.80.10.10
GeneID:7922367Genevisible:Q9LJF8Gramene:AT3G26922.1hmmpanther:PTHR32212
hmmpanther:PTHR32212:SF126HOGENOM:HOG000220924InParanoid:Q9LJF8InterPro:IPR001810
InterPro:IPR013101InterPro:IPR032675KEGG:ath:AT3G26922OMA:VEATIMN
PaxDb:Q9LJF8Pfam:PF00646Pfam:PF07723Pfam:Q9LJF8
Pfscan:PS50181PhylomeDB:Q9LJF8PRO:PR:Q9LJF8PROSITE:PS50181
ProteinModelPortal:Q9LJF8Proteomes:UP000006548RefSeq:NP_001154649.1SMR:Q9LJF8
SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT3G26922UniGene:At.49658
UniProt:Q9LJF8
Coordinates (TAIR10) chr3:+:9922858..9923891
Molecular Weight (calculated) 34625.00 Da
IEP (calculated) 5.08
GRAVY (calculated) 0.04
Length 306 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRCLRNGNG VNEDRISDLP EALLLQILSM LPVKDVVTTS VLSKPWRSLW KLVPTLKFDY ENNQSEDETY SEIVCRLLLS NKAPFLESLH LGFRFGECRS
101: VEVGMWIGIA YARHVRDLVL HVESVKGSFI FPTGLYNCET LESLTLRSWV LVDVPSPACL KSLRTLRLEN VDYKYDDSVY NLLSGCPNLE NLVVYRGNLL
201: EVETFTIAVP SLQRLTIYDD NDGEYCTGYV INAPSLKYLK IDGFKALESC LIENAPELVE ATIMNVSKII NEKLLETLTS VKRLSLALSP LELKFSCNNY
301: SGHLLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)