AT3G26910.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41100.1); Has 2609 Blast hits to 1522 proteins in 296 species: Archae - 0; Bacteria - 149; Metazoa - 565; Fungi - 402; Plants - 355; Viruses - 61; Other Eukaryotes - 1077 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:9915338..9918511 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 67591.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.19 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.75 | ||||||||||||||||||||||||
| Length | 608 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKASIEKLRR LTSHSHKVDV KEKGDVMATT QIDELDRAGK DMQDMRECYD RLLAAAAATA NSAYEFSESL GEMGSCLEQI APHNDEESSR ILFMLGKVQS 101: ELQRLLDTYR SHIFETITSP SEALLKDLRY VEDMKQQCDG KRNVYEMSLV KEKGRPKSSK GERHIPPESR PAYSEFHDEA TMCIFRLKSL KEGQARSLLI 201: QAVRHHTAQM RLFHTGLKSL EAVERHVKVA VEKQHIDCDL SVHGNEMEAS EDDDDDGRYM NREGELSFDY RTNEQKVEAS SLSTPWATKM DDTDLSFPRP 301: STTRPAAVNA DHREEYPVST RDKYLSSHSA PLFPEKKPDV SERLRQANPS FNAYVLPTPN DSRYSKPVSQ ALNPRPTNHS AGNIWHSSPL EPIKSGKDGK 401: DAESNSFYGR LPRPSTTDTH HHQQQAAGRH AFSGPLRPSS TKPITMADSY SGAFCPLPTP PVLQSHPHSS SSPRVSPTAS PPPASSPRLN ELHELPRPPG 501: HFAPPPRRAK SPGLVGHSAP LTAWNQERST VTVAVPSATN IVASPLPVPP LVVPRSYSIP SRNQRVVSQR LVERRDDIVA SPPLTPMSLS RPLPQATGVA 601: QTSQIRGY |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)