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AT3G26900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : shikimate kinase like 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
shikimate kinase like 1 (SKL1); FUNCTIONS IN: shikimate kinase activity, ATP binding; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase 1 (TAIR:AT2G21940.5); Has 3815 Blast hits to 3815 proteins in 1373 species: Archae - 6; Bacteria - 2903; Metazoa - 33; Fungi - 1; Plants - 140; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G26900-MONOMERBioCyc:ARA:GQT-2232-MONOMERBioCyc:ARA:GQT-2233-MONOMERBioGrid:7636eggNOG:COG0703eggNOG:ENOG410IH3HEMBL:AB016889
EMBL:AK318791EMBL:BT012132EMBL:BT012407EMBL:CP002686EnsemblPlants:AT3G26900EnsemblPlants:AT3G26900.1EnsemblPlants:AT3G26900.2
EnsemblPlants:AT3G26900.3entrez:822306Gene3D:3.40.50.300GeneID:822306Genevisible:Q9LW20GO:GO:0009507GO:GO:0009570
GO:GO:0009658GO:GO:0010027Gramene:AT3G26900.1Gramene:AT3G26900.2Gramene:AT3G26900.3gramene_plant_reactome:1119430gramene_plant_reactome:6874730
hmmpanther:PTHR21087hmmpanther:PTHR21087:SF4HOGENOM:HOG000077619InParanoid:Q9LW20IntAct:Q9LW20InterPro:IPR027417InterPro:IPR031322
KEGG:00400+2.7.1.71KEGG:ath:AT3G26900OMA:MAANDMLPaxDb:Q9LW20Pfam:PF01202Pfam:Q9LW20PhylomeDB:Q9LW20
PRIDE:Q9LW20PRO:PR:Q9LW20ProteinModelPortal:Q9LW20Proteomes:UP000006548RefSeq:NP_001118711.1RefSeq:NP_001118712.1RefSeq:NP_189325.2
SMR:Q9LW20STRING:3702.AT3G26900.1SUPFAM:SSF52540TAIR:AT3G26900tair10-symbols:ATSKL1tair10-symbols:SKL1UniGene:At.37144
unipathway:UPA00053UniProt:Q9LW20
Coordinates (TAIR10) chr3:-:9912314..9914424
Molecular Weight (calculated) 30475.40 Da
IEP (calculated) 4.79
GRAVY (calculated) -0.10
Length 280 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIFSASASL TLTGFVPRLL PLLSPQARTT LCKPLLSSSS TRLISCHSRI APSRSLADQS ASTGISVVDS DPIDVVKRKA MDIAPELKGA SIFLVGINNS
101: IKTNTGKLLA EALRYYYFDS DNLITEAAGG NVSAQALKEA DEKAFQESET EVLKQLSSMG RLVVCAGDGA VQSLRNLALL RHGISIWIDV PLDITAKGDD
201: DSFHSEPSPE LFDTLKASYE KSRKGYETAD VSISLEKIAT KLEFEDLEAV TSEDIALEIL KEIEKLTRVK KMMEEASRPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)