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AT3G26890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41110.1); Has 393 Blast hits to 383 proteins in 134 species: Archae - 0; Bacteria - 61; Metazoa - 171; Fungi - 74; Plants - 80; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41115V6eggNOG:KOG2306EMBL:AK317641EMBL:AY050985EMBL:AY117266EMBL:CP002686EnsemblPlants:AT3G26890
EnsemblPlants:AT3G26890.1EnsemblPlants:AT3G26890.2EnsemblPlants:AT3G26890.3EnsemblPlants:AT3G26890.4EnsemblPlants:AT3G26890.5entrez:822305ExpressionAtlas:Q949N7
GeneID:822305Gramene:AT3G26890.1Gramene:AT3G26890.2Gramene:AT3G26890.3Gramene:AT3G26890.4Gramene:AT3G26890.5hmmpanther:PTHR13199
hmmpanther:PTHR13199:SF14InterPro:IPR025261InterPro:IPR033473KEGG:ath:AT3G26890OMA:SQLRIPMPfam:PF13889Pfam:PF13915
PhylomeDB:Q949N7Proteomes:UP000006548RefSeq:NP_001030777.1RefSeq:NP_001118709.1RefSeq:NP_001118710.1RefSeq:NP_566803.1RefSeq:NP_850637.1
SMART:SM01177STRING:3702.AT3G26890.1TAIR:AT3G26890UniGene:At.21956UniGene:At.37144UniProt:Q949N7
Coordinates (TAIR10) chr3:-:9907456..9910463
Molecular Weight (calculated) 70597.80 Da
IEP (calculated) 7.83
GRAVY (calculated) -0.50
Length 649 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLPQTASSE QSQEALSTPS CSLSQSLPVY ATSHDSDVLN SGSEEGICSS IAEFDRKTSL EPLEFTDDSC RFRGTCVVTS SSAHGSTSYA AGKVSSSLTG
101: ARRIVGFASG ETSSLDNKQT SVAVDHSLSS TVGVAGVDIG GALVRKRVLS PLNTLFPVKF RGDLHDISCG NHQQITYSGQ SNGFCNSVAQ DHIKANTPSR
201: LHLSTTPTTT SCWEWKNVSN SGRLSSMVFT DGPLLDSVDL RQPVKGGEVC LYSPLYETSS TPNKPLPCDK EISVSPPLCL SPLGPKFSER VKAVRSCQTG
301: KILEDLRNIS EEAELRVDRR LFDDAYAIRR AFSMERSTES APASPCKRFI RSLSGRPIQR SLVGSFEESL LTGRLSCGPT NQKIDGFLAV LSIAGGNISP
401: KSQKLPFSVT SAGDDCLLLY YASIDLAGGS KLNKFWGQKV KTSQMNSDAQ SSKSQLRIPM KGRIQLVLSN PEKTPLHTFL CNYDLTDMPA GTKTFLRQKV
501: TLGSSNPTSE ATQENTRKAT SLEKENSKHG DKESCEGSDS VDSVEGDVLH ESGKICLKPS KECNGGSGAL RYALHLRFLC PLPKKSSKKS EETESTGQKK
601: NLDSDGKRRF YLYNDLRVVF PQRHTDSDEG KLNVEYHYPE NPRYFDITE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)