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AT3G26810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.943
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : auxin signaling F-box 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
auxin signaling F-box 2 (AFB2); FUNCTIONS IN: ubiquitin-protein ligase activity, auxin binding; INVOLVED IN: stamen development, pollen maturation, response to molecule of bacterial origin; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: auxin signaling F-box 3 (TAIR:AT1G12820.1); Has 2856 Blast hits to 1854 proteins in 175 species: Archae - 0; Bacteria - 10; Metazoa - 953; Fungi - 156; Plants - 1568; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).
Protein Annotations
BioGrid:7626DIP:DIP-34608NeggNOG:ENOG410XQ54eggNOG:KOG1947EMBL:AB016889EMBL:AY062568EMBL:BT010396
EMBL:CP002686EnsemblPlants:AT3G26810EnsemblPlants:AT3G26810.1entrez:822296Gene3D:3.80.10.10GeneID:822296Genevisible:Q9LW29
GO:GO:0000822GO:GO:0002237GO:GO:0005634GO:GO:0005774GO:GO:0006952GO:GO:0009734GO:GO:0010011
GO:GO:0010152GO:GO:0016567GO:GO:0019005GO:GO:0048443Gramene:AT3G26810.1hmmpanther:PTHR24006hmmpanther:PTHR24006:SF456
HOGENOM:HOG000239805InParanoid:Q9LW29IntAct:Q9LW29InterPro:IPR001810InterPro:IPR006553InterPro:IPR032675KEGG:ath:AT3G26810
OMA:ARLMACAPaxDb:Q9LW29Pfam:PF00646Pfam:Q9LW29PhylomeDB:Q9LW29PRIDE:Q9LW29PRO:PR:Q9LW29
ProteinModelPortal:Q9LW29Proteomes:UP000006548RefSeq:NP_566800.1SMART:SM00256SMART:SM00367SMR:Q9LW29STRING:3702.AT3G26810.1
SUPFAM:SSF52047TAIR:AT3G26810tair10-symbols:AFB2UniGene:At.6031UniPathway:UPA00143UniProt:Q9LW29
Coordinates (TAIR10) chr3:+:9868342..9870464
Molecular Weight (calculated) 64608.60 Da
IEP (calculated) 7.40
GRAVY (calculated) -0.03
Length 575 amino acids
Sequence (TAIR10)
(BLAST)
001: MNYFPDEVIE HVFDFVTSHK DRNAISLVCK SWYKIERYSR QKVFIGNCYA INPERLLRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVLP WIEALARSRV
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFTT DGLASIAANC RHLRDLDLQE NEIDDHRGQW LSCFPDTCTT LVTLNFACLE GETNLVALER
201: LVARSPNLKS LKLNRAVPLD ALARLMACAP QIVDLGVGSY ENDPDSESYL KLMAVIKKCT SLRSLSGFLE AAPHCLSAFH PICHNLTSLN LSYAAEIHGS
301: HLIKLIQHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLLGGG NTAVTEEGLV AISAGCPKLH SILYFCQQMT NAALVTVAKN CPNFIRFRLC
401: ILEPNKPDHV TSQPLDEGFG AIVKACKSLR RLSLSGLLTD QVFLYIGMYA NQLEMLSIAF AGDTDKGMLY VLNGCKKMKK LEIRDSPFGD TALLADVSKY
501: ETMRSLWMSS CEVTLSGCKR LAEKAPWLNV EIINENDNNR MEENGHEGRQ KVDKLYLYRT VVGTRMDAPP FVWIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)