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AT3G26740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CCR-like
Curator
Summary (TAIR10)
transcripts are differentially regulated at the level of mRNA stability at different times of day controlled by the circadian clock. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.
Computational
Description (TAIR10)
CCR-like (CCL); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Light regulated Lir1 (InterPro:IPR009856); Has 69 Blast hits to 69 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J095eggNOG:ENOG410YMXPEMBL:AB026648EMBL:AF375445EMBL:AF410315EMBL:AF424610EMBL:AY060542
EMBL:AY088085EMBL:CP002686EMBL:X97829EMBL:X98130EnsemblPlants:AT3G26740EnsemblPlants:AT3G26740.1entrez:822286
GeneID:822286GO:GO:0009507Gramene:AT3G26740.1hmmpanther:PTHR36762hmmpanther:PTHR36762:SF2HOGENOM:HOG000237398InterPro:IPR009856
KEGG:ath:AT3G26740OMA:REYEEYNPfam:PF07207PhylomeDB:Q96500Proteomes:UP000006548RefSeq:NP_189308.1STRING:3702.AT3G26740.1
TAIR:AT3G26740tair10-symbols:CCLUniGene:At.20029UniGene:At.22293UniProt:Q96500
Coordinates (TAIR10) chr3:+:9827868..9828461
Molecular Weight (calculated) 15314.80 Da
IEP (calculated) 4.30
GRAVY (calculated) -0.33
Length 141 amino acids
Sequence (TAIR10)
(BLAST)
001: MQGALFIKPT ILLPLPSSVS SPKLTFLLPH ATKASRLSSL RSNNSSSSSS LTSDPNTVDY NSSILSVFPA EACEVISGYA CSADIYPEVK LDTKPVSRPV
101: ASEPVDREYE EYNSPKTVFR EEACDDLGGE FCEPDFQKDA N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)