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AT3G26720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 17151019
AmiGO : vacuole 15215502
AmiGO : vacuole 15539469
TAIR : plasma membrane 17151019
TAIR : vacuole 15215502
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16356755 (2006): extracellular region
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase family 38 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1103 Blast hits to 1053 proteins in 165 species: Archae - 7; Bacteria - 107; Metazoa - 691; Fungi - 10; Plants - 161; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G26720-MONOMERCAZy:GH38EC:3.2.1.-eggNOG:ENOG410XQMZeggNOG:KOG1959EMBL:AB026648EMBL:AY039536
EMBL:AY113006EMBL:CP002686EMBL:X98130EMBL:Y11767EnsemblPlants:AT3G26720EnsemblPlants:AT3G26720.1entrez:822284
ExpressionAtlas:P94078Gene3D:1.20.1270.50Gene3D:2.60.40.1180Gene3D:3.20.110.10GeneID:822284GO:GO:0004559GO:GO:0005773
GO:GO:0005774GO:GO:0006013GO:GO:0008270GO:GO:0009505GO:GO:0030246Gramene:AT3G26720.1hmmpanther:PTHR11607
hmmpanther:PTHR11607:SF29HOGENOM:HOG000007676InterPro:IPR000602InterPro:IPR011013InterPro:IPR011330InterPro:IPR011682InterPro:IPR013780
InterPro:IPR015341InterPro:IPR027291InterPro:IPR028995OMA:TQRQHVAPfam:PF01074Pfam:PF07748Pfam:PF09261
PhylomeDB:P94078Proteomes:UP000006548RefSeq:NP_189306.1SMART:SM00872SMR:P94078STRING:3702.AT3G26720.1SUPFAM:SSF74650
SUPFAM:SSF88688SUPFAM:SSF88713TAIR:AT3G26720TMHMM:TMhelixUniGene:At.21651UniProt:P94078
Coordinates (TAIR10) chr3:+:9816707..9823056
Molecular Weight (calculated) 115226.00 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.34
Length 1019 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAVKCFSLYL ILAAIVIGGV TSEYIEYNTK PRIVPEKINV HLVPHSHDDV GWLKTVDQYY VGSNNSIRGA CVQNVLDSVI ASLLDDENRK FIYVEMAFFQ
0101: RWWRQQSNAK KVKVKKLVDS GQLEFINGGM CMHDEATPHY IDMIDQTTLG HQFIKTEFGQ VPRVGWQIDP FGHSAVQAYL LGAEFGFDSL FFARIDYQDR
0201: AKRLREKTLE VIWQGSKSLG SSSQIFTGVF PRHYDPPEGF TFEINDVSAP IQDDPLLFDY NVQERVNDFV AAALAQVNVT RTNHIMWLMG TDFRYQYAYS
0301: WFRQIDKFIH YVNKDGRLNV LYSTPSIYTD AKYAANESWP LKTDDFFPYA DKPNAYWTGY FTSRPAFKKY VRDLSGYYLA ARQLEFLRGR DSSGPTTDML
0401: ADALAIAQHH DAVSGTQRQH VAADYALRLS MGYLQAEKLV ASSLSFLSAA KSSTEKKNPG TKFQQCPLLN ISYCPASEAR LLSGKSLVVV VYNSLGWKRE
0501: EVVRVPVSSE NVIVKDASGK EVVFQLLPLS EIALRIRNEY VKAYLGRSPR DTAKHVLAFT ASVPPLGFSS YVISDTGRTA RGLSASYVTS GSMNQNVEVG
0601: QGNLKLRYSE EGVKITRHLS TKNQVTAEQS YAYYIGSNGT DKDPQASGAY VFRPDGVLPI KSKEEAQLTI VQGPLFDEVH QELNSWISQI TRVYKGKNHA
0701: EIEFTIGPIP ADDGISKEII TKLTTTMKTN GTFYTDSNGR DFIKRIRDFR TDWDLQVYQP VAGNYYPLNL GIYMQDKTSE LSVLVDRAVG GSSLENGQIE
0801: LMLHRRMQHD DIRGVGEILN ETVCLPEGCK GLTIQGKFYV QIDKPGDGAK WRRTFGQEIY SPLLIAFTEQ EGDSWINSHK TTFSAFEPSY SLPKNVALLT
0901: LQELENGEVL LRLAHLFEVG EDSEYSVMAK VELKKLFHNK KIREVKETSL SGNQEKAEME KRRLIWKVEG SAGEEVKRGE AVDAEKLVVE LVPMEIRTLL
1001: IKFDDQIEMV GDKEQQHRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)