AT3G26400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : eukaryotic translation initiation factor 4B1 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of eIF4B - eukaryotic initiation factor 4B | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
eukaryotic translation initiation factor 4B1 (EIF4B1); CONTAINS InterPro DOMAIN/s: Plant specific eukaryotic initiation factor 4B (InterPro:IPR010433); BEST Arabidopsis thaliana protein match is: eukaryotic initiation factor 4B2 (TAIR:AT1G13020.1); Has 19846 Blast hits to 11644 proteins in 926 species: Archae - 13; Bacteria - 5482; Metazoa - 6891; Fungi - 1262; Plants - 3241; Viruses - 222; Other Eukaryotes - 2735 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:9666616..9669081 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57723.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.70 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.18 | ||||||||||||||||||||||||||||||||||||||||
| Length | 532 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKAWGGIGI GAWADEAERA DEEQAAEATA ATADTQSFPS LREAAAATAT SGKSRKMKKM SLSEFTTGAY TAPGGRNSVG LTQQEILQLP TGPRQRSEEE 101: MQPGRLGGGF SSYGGRSGGR IGRDRDDSDG SWSGGGGGGG RRPYGGGFDD DRRGNQSRVS DFPQPSRADE VDDWGKEKKP LPSFDQGRQG RYSGDGGGFG 201: GGGSGFGGGG GGGGGGLSRA DDVDNWGAGK RQAPVRSSTF GSSFGDSGQE ERRRLVLEPR KVESGGSETP PVVEKTSKPN PFGAARPRED VLAEKGLDWK 301: KIDSEIEAKK GSSQTSRPTS AHSSRPSSAQ SNRSESSGLN NVVKPRPKVN PFGDAKPREV LLEEQGKDWR KMDLELEHRR VDRPETEEEK MLKEEIEELR 401: KKLEKESVAP EIKESDQEPG SNNNHNDLPE IIRGKEKDLE ILTRELDDKV RFRQKPVERP GSGAGRTGTY SERTHSRAGS IDETRSFEST ERPRSRGAVD 501: AWVRPANEQR RNFQGTKERG FFSNRSSSRE GW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)