AT3G26380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Melibiase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Melibiase family protein; FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: N-terminal protein myristoylation, carbohydrate metabolic process, metabolic process, lactose catabolic process; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 27 (InterPro:IPR002241), Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Melibiase family protein (TAIR:AT3G56310.1); Has 1323 Blast hits to 1316 proteins in 313 species: Archae - 2; Bacteria - 513; Metazoa - 306; Fungi - 224; Plants - 205; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:9660140..9663145 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72346.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.99 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 647 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTGLSVEKTG STRSTVFFII FNLSIFSLSI EARSRQQHAS FPPRGWNSYD SFCWTISEAE FLQSAEIVSK RLLPHGYQYV VVDYLWYRKK VEGAYVDSLG 101: FDVIDEWGRL HPDPGRWPSS RGGKGFTEVA EKVHRMGLKF GIHVMGGIST QAYNANSLVM DSVKGGAYEE SGRQWRAKDI GIKERACVWM SHGFMSVNTK 201: LGAGKAFLRS LYRQYAEWGV DFIKHDCVFG TDFNIEEITY VSEVLKELDR PVLYSISPGT SVTPTMAKEV SQLVNMYRIT GDDWDTWKDV TAHFDISRDL 301: SASSMIGARG LQGKSWPDLD MLPLGWLTDQ GSNVGPHRAC NLNLEEQKSQ MTLWSIAKSP LMFGGDVRNL DATTYNLITN PTLLEINSYS SNNKEFPYIT 401: ATRVSRNKHK GYPHHPTGKN ISTKHAFGLT SCKEQKANTW FIVDKNRGQI CWNQHSSEKL EKPFCLYNRK ALLASDKKLK HNQLYQGKLH LHTNDKAQSC 501: LAASSQQKLT SKDYSQGALS PCKLDANQMW ELHSNGTLEN SYSGLCAVLN PVKAAEASSN GVRSWIATGR RGEVYVAFFN LNQEKTKISA KISDIATALR 601: GKKNLVGASC TSHELWSGKD FGPTKDSVSI QVEPHGPALF VLHCSNA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)