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AT3G26100.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.860
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Regulator of chromosome condensation (RCC1) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G15430.2); Has 17367 Blast hits to 5203 proteins in 406 species: Archae - 82; Bacteria - 2003; Metazoa - 7050; Fungi - 936; Plants - 2608; Viruses - 2; Other Eukaryotes - 4686 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5184eggNOG:KOG1426EMBL:AY035031EMBL:AY059105
EMBL:CP002686EnsemblPlants:AT3G26100EnsemblPlants:AT3G26100.1entrez:822208
ExpressionAtlas:Q93V68Gene3D:2.130.10.30GeneID:822208Gramene:AT3G26100.1
hmmpanther:PTHR22870hmmpanther:PTHR22870:SF24HOGENOM:HOG000070923InterPro:IPR000408
InterPro:IPR009091KEGG:ath:AT3G26100Pfam:PF00415Pfscan:PS50012
PRINTS:PR00633PROSITE:PS00626PROSITE:PS50012Proteomes:UP000006548
RefSeq:NP_566789.1scanprosite:PS00626SMR:Q93V68STRING:3702.AT3G26100.2
SUPFAM:SSF50985TAIR:AT3G26100UniGene:At.25510UniGene:At.69016
UniProt:Q93V68
Coordinates (TAIR10) chr3:+:9538458..9540149
Molecular Weight (calculated) 46618.30 Da
IEP (calculated) 7.12
GRAVY (calculated) -0.25
Length 432 amino acids
Sequence (TAIR10)
(BLAST)
001: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
101: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
201: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
301: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
401: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)