AT3G25780.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : allene oxide cyclase 3 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
allene oxide cyclase 3 (AOC3); FUNCTIONS IN: allene-oxide cyclase activity; INVOLVED IN: response to salt stress, response to fungus, jasmonic acid biosynthetic process; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Allene oxide cyclase (InterPro:IPR009410); BEST Arabidopsis thaliana protein match is: allene oxide cyclase 2 (TAIR:AT3G25770.1); Has 202 Blast hits to 202 proteins in 32 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 198; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:9409362..9410409 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 28399.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.54 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||
| Length | 258 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSSAAMSL ESISMTTLNN LSRNHQSHRS SLLGFSRSFQ NLGISSNGPD FSSRSRSTTS KNLNVTRAFF WNWGKKTENS RPSKIQELNV YELNEGDRNS 101: PAVLKLGKKP TELCLGDLVP FTNKLYTGDL KKRVGITAGL CVLIQHVPEK SGDRFEASYS FYFGDYGHLS VQGQYLTYED TFLAVTGGSG IFEGAYGQVK 201: LRQLVYPTKL FYTFYLKGLA NDLPLELTGT AVTPSKDVKP APEAKAMEPS GVISNFTN |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)