suba logo
AT3G25655.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : inflorescence deficient in abscission (IDA)-like 1
Curator
Summary (TAIR10)
Similar to Inflorescence Deficient in Abscission (IDA). Involved in floral organ abscission.
Computational
Description (TAIR10)
inflorescence deficient in abscission (IDA)-like 1 (IDL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: floral organ abscission; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:7484EMBL:AP001313EMBL:AY086111EMBL:BT024802EMBL:CP002686EnsemblPlants:AT3G25655EnsemblPlants:AT3G25655.1
entrez:822153GeneID:822153Genevisible:Q29PV4GO:GO:0005615GO:GO:0010227Gramene:AT3G25655.1InParanoid:Q29PV4
KEGG:ath:AT3G25655OMA:FMTLYIVPaxDb:Q29PV4Pfam:Q29PV4PhylomeDB:Q29PV4PRO:PR:Q29PV4Proteomes:UP000006548
RefSeq:NP_566774.1STRING:3702.AT3G25655.1TAIR:AT3G25655tair10-symbols:IDL1TMHMM:TMhelixUniGene:At.37344UniProt:Q29PV4
Coordinates (TAIR10) chr3:-:9337709..9337969
Molecular Weight (calculated) 9782.11 Da
IEP (calculated) 11.63
GRAVY (calculated) 0.01
Length 86 amino acids
Sequence (TAIR10)
(BLAST)
1: MNLSHKTMFM TLYIVFLLIF GSYNATARIG PIKLSETEIV QTRSRQEIIG GFTFKGRVFH SFSKRVLVPP SGPSMRHNSV VNNLKH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)