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AT3G25600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.623
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT1G18530.1); Has 23107 Blast hits to 15210 proteins in 1505 species: Archae - 1; Bacteria - 136; Metazoa - 8522; Fungi - 5826; Plants - 5264; Viruses - 0; Other Eukaryotes - 3358 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5126eggNOG:KOG0027EMBL:AP001313EMBL:BT003928EMBL:BT014869EMBL:CP002686EnsemblPlants:AT3G25600
EnsemblPlants:AT3G25600.1entrez:822147Gene3D:1.10.238.10GeneID:822147Genevisible:Q9LI84GO:GO:0005509Gramene:AT3G25600.1
hmmpanther:PTHR10891hmmpanther:PTHR10891:SF638HOGENOM:HOG000233018InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247KEGG:ath:AT3G25600
KO:K13448OMA:NEFANIMPaxDb:Q9LI84Pfam:PF13499Pfam:Q9LI84Pfscan:PS50222PRIDE:Q9LI84
PRO:PR:Q9LI84PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:Q9LI84Proteomes:UP000006548RefSeq:NP_189188.4scanprosite:PS00018
SMART:SM00054SMR:Q9LI84STRING:3702.AT3G25600.1SUPFAM:SSF47473TAIR:AT3G25600UniGene:At.37357UniProt:Q9LI84
Coordinates (TAIR10) chr3:+:9307367..9307852
Molecular Weight (calculated) 17643.00 Da
IEP (calculated) 4.21
GRAVY (calculated) -0.17
Length 161 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTKPTDQI KQLKDIFARF DMDKDGSLTQ LELAALLRSL GIKPRGDQIS LLLNQIDRNG NGSVEFDELV VAILPDINEE VLINQEQLME VFRSFDRDGN
101: GSITAAELAG SMAKMGHPLT YRELTEMMTE ADSNGDGVIS FNEFSHIMAK SAADFLGLTA S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)