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AT3G25545.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.992
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHAPeggNOG:ENOG4112ANYEMBL:AB025639EMBL:AY058108
EMBL:AY090313EMBL:CP002686EnsemblPlants:AT3G25545EnsemblPlants:AT3G25545.1
entrez:822141GeneID:822141GO:GO:0005829Gramene:AT3G25545.1
hmmpanther:PTHR37227hmmpanther:PTHR37227:SF1HOGENOM:HOG000090780IntAct:Q9LSU9
InterPro:IPR019151KEGG:ath:AT3G25545OMA:KSCNIYSPfam:PF09754
PhylomeDB:Q9LSU9Proteomes:UP000006548RefSeq:NP_566770.1TAIR:AT3G25545
UniGene:At.22640UniGene:At.287UniProt:Q9LSU9
Coordinates (TAIR10) chr3:+:9277637..9278440
Molecular Weight (calculated) 29391.40 Da
IEP (calculated) 5.41
GRAVY (calculated) -0.06
Length 267 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDVLTENPP PSRFFQEDLN NFVQPPESLP SPFIIFSNPK PELPLRPSLL IIAISSPSLY IFHSLPSKTL LGSLIMPEVP FSGNTMEPSL EDKSCNIYSL
101: SSADDKNLTL LVSVQLPVSP ERSNLVSRLL IAKDIIPERV IILDSIQSRN FRGRLSPDET LAAKLETSAE KKATTHTGLV NLDYFPSGSV IDGLSASLLS
201: RCQLKNIRGT LVISWPEFGP SVIRFAGALL KKIVPSLDVA SVNKDLEKNS SRTGLKKDTW LDSDLYT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)