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AT3G25480.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rhodanese/Cell cycle control phosphatase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Rhodanese/Cell cycle control phosphatase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: thylakoid rhodanese-like (TAIR:AT4G01050.1); Has 72 Blast hits to 72 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y65VeggNOG:KOG1075EMBL:AB025639EMBL:AK221606EMBL:AY087970EMBL:BT024493EMBL:CP002686
EnsemblPlants:AT3G25480EnsemblPlants:AT3G25480.1entrez:822132Gene3D:3.40.250.10GeneID:822132Genevisible:Q56XR7GO:GO:0009507
GO:GO:0009535GO:GO:0016021Gramene:AT3G25480.1hmmpanther:PTHR11177hmmpanther:PTHR11177:SF167HOGENOM:HOG000238554InParanoid:Q56XR7
InterPro:IPR001763iPTMnet:Q56XR7KEGG:ath:AT3G25480OMA:FKEAYYIPaxDb:Q56XR7Pfam:Q56XR7PhylomeDB:Q56XR7
PRIDE:Q56XR7PRO:PR:Q56XR7ProteinModelPortal:Q56XR7Proteomes:UP000006548RefSeq:NP_566766.1SMR:Q56XR7STRING:3702.AT3G25480.1
SUPFAM:SSF52821TAIR:AT3G25480TMHMM:TMhelixUniGene:At.37383UniGene:At.63571UniProt:Q56XR7
Coordinates (TAIR10) chr3:-:9235591..9236598
Molecular Weight (calculated) 29012.90 Da
IEP (calculated) 8.74
GRAVY (calculated) -0.10
Length 264 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSLPIILAS SPLRNLTKPC STSQIPKPIQ NSTKQPPIHL LTKTNLSVTI SQLIITSPVL ASESFDSISS DPSSGKIDLE SILVTIDNFF NKYPFFVAGC
101: TFTYLVVYPA VMFYLRKYKP ISAMNAFRKL KNESDSQLLD IRDVKTLALL ASPNLKFLGK SSVQVPFSEN DEEGFLTKVK GSFSDAENTV VCVLDNFDGN
201: SSKVAELLIK NGFKEAYYIR GGARGKNGWL AIQEELLPPP VHMYTAKNVK SSNNNEASVV GTEN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)