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AT3G25440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding CRS1 / YhbY (CRM) domain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT4G13070.1); Has 778 Blast hits to 674 proteins in 112 species: Archae - 5; Bacteria - 24; Metazoa - 131; Fungi - 59; Plants - 341; Viruses - 37; Other Eukaryotes - 181 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS9DeggNOG:KOG1990EMBL:AB025639EMBL:AK176804EMBL:CP002686EnsemblPlants:AT3G25440EnsemblPlants:AT3G25440.1
entrez:822128ExpressionAtlas:Q67XL4Gene3D:3.30.110.60GeneID:822128Genevisible:Q67XL4GO:GO:0003723GO:GO:0009507
hmmpanther:PTHR31426hmmpanther:PTHR31426:SF5HOGENOM:HOG000240887InParanoid:Q67XL4InterPro:IPR001890iPTMnet:Q67XL4ncoils:Coil
OMA:GQKCKNYPaxDb:Q67XL4Pfam:PF01985Pfam:Q67XL4Pfscan:PS51295PhylomeDB:Q67XL4PRIDE:Q67XL4
PRO:PR:Q67XL4PROSITE:PS51295ProteinModelPortal:Q67XL4Proteomes:UP000006548RefSeq:NP_189171.2SMART:SM01103SMR:Q67XL4
STRING:3702.AT3G25440.1SUPFAM:SSF75471TAIR:AT3G25440UniGene:At.37388UniProt:Q67XL4
Coordinates (TAIR10) chr3:+:9223998..9225505
Molecular Weight (calculated) 51477.50 Da
IEP (calculated) 8.72
GRAVY (calculated) -0.79
Length 444 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFLTAAIRV STSAASMLLR RKSRQLGFLA SSSPLFSSFN SMNRTISSCN IVCKVLHKES LTRPMWNVSF LRSSSFHSTP ARETGDDDIS KSENSSSQDG
101: DSCTKLKRKK LKGKRAVVRW LKFFRWKKKK EFERMTSEEK ILNKLRKARK KEERLMETMK KLEPSESAET THDPEILTPE EHFYYLKMGL KCKNYVPVGR
201: RGIYQGVILN MHLHWKKHQT LQVVIKTFTP DEVKEIAVEL ARLTGGIVLD VHEGNTIIMY RGKNYVQPPT EIMSPRITLP RKKALDKSKC RDALRAVRKY
301: IPRLEQELQL LQAQAETKRD YTNVKVDDNQ ERSEELKKII ERSEECLEDE QEEDEAGLEL ATDSDLSDIF ETDSELEDAK TERPLFLEEF EKFPAINNRE
401: DEDFGDLGKA KSEGEENDDD KSPNFDEVDK MFLRAAFLLK KKRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)