AT3G25420.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 0.996 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : serine carboxypeptidase-like 21 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
serine carboxypeptidase-like 21 (scpl21); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: stem, embryo, leaf, pollen tube; EXPRESSED DURING: LP.04 four leaves visible, C globular stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 20 (TAIR:AT4G12910.1); Has 3999 Blast hits to 3555 proteins in 325 species: Archae - 0; Bacteria - 119; Metazoa - 730; Fungi - 984; Plants - 1665; Viruses - 0; Other Eukaryotes - 501 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:9217832..9220836 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 56108.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.02 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 505 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGRLVEAIIA SILLSLCFTI TKSAPKSALI TNLPGFNGTF PSKHYAGYVA IDKHRNKNLW YYFVESERNA SVDPVVLWLN GGPGCSSMDG FVYEHGPFNF 101: EPKKKNSHLL HLNPYSWSKV SNIIYLDSPV GVGFSYSNDN ADYTTDDTKT ASDTHTFLLE WFKMFPEFQS NPFFISGESY AGIYVPTLAA EVVKGHKNVT 201: KPVINFKGYL VGNGVTDEVF DGNALVPFTH GMGLISDELY EETKLVCNGT YYTGGQSGVS KECAGKLKTV SDTVNLLNLY NILEPCYHGT SLSALDIEFL 301: PKSLLTLGKT EKPMAVRKRM FGRAWPLGAV VRPGIVPSWS QLLAGFGVPC IDDTVATKWL NDPAVRKAVH AKEVSIQFII FLSISISIGN WELCSSNLEY 401: RHDTGSMIEY HRNLTLSGFR ALIFSGDHDM CVPYTGSEAW TKAMGYKVVD EWRPWMSNNQ VAGFTQGYAN NLTFLTIKGA GHTVPEYKPR ESLDFYSRFL 501: AGEKI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)