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AT3G25410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sodium Bile acid symporter family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sodium Bile acid symporter family; FUNCTIONS IN: transporter activity, bile acid:sodium symporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657); BEST Arabidopsis thaliana protein match is: bile acid transporter 5 (TAIR:AT4G12030.2); Has 4132 Blast hits to 4124 proteins in 1073 species: Archae - 57; Bacteria - 2245; Metazoa - 386; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 1216 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0385eggNOG:KOG2718EMBL:AB025639EMBL:AY081301
EMBL:AY086664EMBL:AY128781EMBL:CP002686EnsemblPlants:AT3G25410
EnsemblPlants:AT3G25410.1entrez:822125GeneID:822125Genevisible:Q8RXE8
GO:GO:0006810GO:GO:0009941GO:GO:0016021Gramene:AT3G25410.1
hmmpanther:PTHR10361hmmpanther:PTHR10361:SF33HOGENOM:HOG000236200InParanoid:Q8RXE8
InterPro:IPR002657KEGG:ath:AT3G25410OMA:WVSKELYPANTHER:PTHR10361
PaxDb:Q8RXE8Pfam:PF01758Pfam:Q8RXE8PhylomeDB:Q8RXE8
PRIDE:Q8RXE8PRO:PR:Q8RXE8ProteinModelPortal:Q8RXE8Proteomes:UP000006548
Reactome:R-ATH-425366RefSeq:NP_566764.1SMR:Q8RXE8STRING:3702.AT3G25410.1
TAIR:AT3G25410TMHMM:TMhelixUniGene:At.37394UniProt:Q8RXE8
Coordinates (TAIR10) chr3:-:9214565..9216331
Molecular Weight (calculated) 45563.00 Da
IEP (calculated) 8.69
GRAVY (calculated) 0.66
Length 431 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLIASLSLP PPAIQRQSLS EFHNLPAKSQ SFNCQFRSSS SPLSSLHSSS LSNFLDFRLR RRNSGLVPVV ACSTTPFMGR VGLHWRDGNM SLLSFCGGTD
101: VTEKADSSQF WSALLPFVVA LTAVAALSYP PSFTWVSKDL YAPALGGIML SIGIQLSVDD FALAFKRPVP LSVGFVAQYV LKPLLGVLVA NAFGMPRTFY
201: AGFILTCCVA GAQLSSYASS LSKADVAMSI LLTSSTTIAS VIFTPLLSGL LIGSVVPVDA VAMSKSILQV VLVPITLGLV LNTYAKPVVT LLQPVMPFVA
301: MVCTSLCIGS PLSINRSQIL SAEGLGLIVP IVTFHAVAFA LGYWFSKIPG LRQEEEVSRT ISLCTGMQSS TLAGLLASQF LGSSQAVPAA CSVVVMAIMG
401: LCLASFWGNG FRIRDVLSLS TPQSTGYTAE S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)