suba logo
AT3G25400.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.863
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:30447334 (2019): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase MazG-related, RS21-C6 (InterPro:IPR011394), EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative catalytic core (InterPro:IPR004518); Has 1123 Blast hits to 1121 proteins in 452 species: Archae - 22; Bacteria - 753; Metazoa - 81; Fungi - 3; Plants - 83; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-801-MONOMERDNASU:822124eggNOG:ENOG410IXWQeggNOG:ENOG4111PYX
EMBL:AB025639EMBL:BT004321EMBL:BT006133EMBL:CP002686
EnsemblPlants:AT3G25400EnsemblPlants:AT3G25400.1entrez:822124GeneID:822124
Gramene:AT3G25400.1hmmpanther:PTHR14552hmmpanther:PTHR14552:SF17HOGENOM:HOG000056700
InterPro:IPR009039InterPro:IPR025984KEGG:ath:AT3G25400OMA:HRVTDEV
Pfam:PF03819Pfam:PF12643Pfscan:PS50912PhylomeDB:Q9LSW0
PROSITE:PS50912Proteomes:UP000006548RefSeq:NP_189167.2SMR:Q9LSW0
STRING:3702.AT3G25400.1SUPFAM:SSF101386TAIR:AT3G25400UniGene:At.37395
UniProt:Q9LSW0
Coordinates (TAIR10) chr3:+:9213236..9214144
Molecular Weight (calculated) 15820.70 Da
IEP (calculated) 4.63
GRAVY (calculated) -0.65
Length 141 amino acids
Sequence (TAIR10)
(BLAST)
001: MNKGEEGGED KEVVSLQTLS KKMDDFAKAR DWEKYHSPRN LLLAMVGEVG ELSEIFQWKG EVARGCPDWK EEEKVHLGEE LSDVLLYLVR LSDACGVDLG
101: KAALRKIELN AIKYPVPKKT DDHCVGDGED SSSKIKLNEE N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)