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AT3G25260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.867
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: embryo, flower; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G25280.1); Has 5539 Blast hits to 5469 proteins in 994 species: Archae - 0; Bacteria - 2299; Metazoa - 478; Fungi - 300; Plants - 2122; Viruses - 0; Other Eukaryotes - 340 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3104eggNOG:KOG1237EMBL:AB026647EMBL:AK227752EMBL:CP002686EnsemblPlants:AT3G25260EnsemblPlants:AT3G25260.1
entrez:822120GeneID:822120Genevisible:Q9LSF0GO:GO:0005215GO:GO:0016021Gramene:AT3G25260.1hmmpanther:PTHR11654
hmmpanther:PTHR11654:SF165HOGENOM:HOG000237400InParanoid:Q9LSF0InterPro:IPR000109InterPro:IPR020846KEGG:ath:AT3G25260OMA:MCFVGTS
PANTHER:PTHR11654PaxDb:Q9LSF0Pfam:PF00854Pfam:Q9LSF0PhylomeDB:Q9LSF0PRIDE:Q9LSF0PRO:PR:Q9LSF0
ProteinModelPortal:Q9LSF0Proteomes:UP000006548RefSeq:NP_189163.1SMR:Q9LSF0STRING:3702.AT3G25260.1SUPFAM:SSF103473TAIR:AT3G25260
TMHMM:TMhelixUniGene:At.21656UniProt:Q9LSF0
Coordinates (TAIR10) chr3:+:9199594..9201764
Molecular Weight (calculated) 57164.20 Da
IEP (calculated) 9.70
GRAVY (calculated) 0.36
Length 515 amino acids
Sequence (TAIR10)
(BLAST)
001: MQIEMEEKFE DWRGKEAISG KHGGIKAAFI ACVVETMENM VFLACSTNFM MYFTKSMNYS TPKAATMVTN FVGTSFLLTI FGGFVADSFL TRFAAFVLFG
101: SIELLGLIML TLQAHITKLQ PQGGKKPSTP QSTVLFTGLY AIAIGVGGVK GSLPAHGGDQ IGTRNQRLIS GFFNWYFFSV CLGGFLAVTL MVWIEENIGW
201: SSSFTISTAV LASAIFVFVA GCPMYRFKRP AGSPLTRIVN VFVSAARNRN RFVTDAEVVT QNHNSTDKSI HHNKFKFLNK AKLNNKISAT QVEETRTFLA
301: LLPIFGSTII MNCCVAQMGT FSVQQGMVTN RKLSRSFEIP VASLNAIPLL CMLSSLALYE LFGKRILSNS ERSSSFNLKR IGYGLALTSI SMAVAAIVEV
401: KRKHEAVHNN IKISVFWLEL QFVMLSLSDM LTVGGMLEFF FRESPASMRS MSTALGWCST AMGFFLSSVL VEVVNGITGW LRDDLNESRL ELFYLVLCVL
501: NTLNLFNYIF WAKRY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)