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AT3G25170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ralf-like 26
Curator
Summary (TAIR10)
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
Computational
Description (TAIR10)
ralf-like 26 (RALFL26); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALF-like 30 (TAIR:AT4G13075.1); Has 49 Blast hits to 49 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUB0eggNOG:ENOG411071REMBL:AB026647EMBL:AY088506EMBL:BT026398EMBL:CP002686EnsemblPlants:AT3G25170
EnsemblPlants:AT3G25170.1entrez:822109GeneID:822109Genevisible:Q0V822GO:GO:0004871GO:GO:0005179GO:GO:0005622
GO:GO:0007267GO:GO:0009506GO:GO:0019722GO:GO:0048046Gramene:AT3G25170.1hmmpanther:PTHR33136HOGENOM:HOG000063246
InParanoid:Q0V822InterPro:IPR008801KEGG:ath:AT3G25170OMA:CHPHNSHPaxDb:Q0V822Pfam:PF05498Pfam:Q0V822
PhylomeDB:Q0V822PRO:PR:Q0V822Proteomes:UP000006548RefSeq:NP_566761.1STRING:3702.AT3G25170.1TAIR:AT3G25170tair10-symbols:RALFL26
UniGene:At.37415UniProt:Q0V822
Coordinates (TAIR10) chr3:-:9165975..9166205
Molecular Weight (calculated) 8610.62 Da
IEP (calculated) 10.85
GRAVY (calculated) -0.48
Length 76 amino acids
Sequence (TAIR10)
(BLAST)
1: MKAWMIILLV ICVAVVVEQS EARKGRKYLN PGVLDRCRGP NPPAGCHPHN SHHKPRVPVH NYSRGCSRIT RCRRDA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)