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AT3G25150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT5G60980.2); Has 9967 Blast hits to 7037 proteins in 656 species: Archae - 4; Bacteria - 1804; Metazoa - 3861; Fungi - 1343; Plants - 1672; Viruses - 20; Other Eukaryotes - 1263 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YV57eggNOG:KOG0116EMBL:AY070733EMBL:AY113005EMBL:CP002686EnsemblPlants:AT3G25150EnsemblPlants:AT3G25150.1
entrez:822106ExpressionAtlas:Q8VYJ4Gene3D:3.10.450.50Gene3D:3.30.70.330GeneID:822106GO:GO:0000166GO:GO:0003676
GO:GO:0005622GO:GO:0006810Gramene:AT3G25150.1hmmpanther:PTHR10693hmmpanther:PTHR10693:SF23HOGENOM:HOG000239086IntAct:Q8VYJ4
InterPro:IPR000504InterPro:IPR002075InterPro:IPR012677InterPro:IPR018222InterPro:IPR032710Pfam:PF00076Pfam:PF02136
Pfscan:PS50102Pfscan:PS50177PhylomeDB:Q8VYJ4PROSITE:PS50102PROSITE:PS50177Proteomes:UP000006548RefSeq:NP_189151.2
SMART:SM00360SMR:Q8VYJ4STRING:3702.AT3G25150.2SUPFAM:SSF54427SUPFAM:SSF54928TAIR:AT3G25150UniGene:At.27515
UniProt:Q8VYJ4
Coordinates (TAIR10) chr3:-:9157161..9159362
Molecular Weight (calculated) 52877.80 Da
IEP (calculated) 6.44
GRAVY (calculated) -0.56
Length 488 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)